Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

31577457 .. 31579108

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGACCGATCACTTCTCCTCCTCCGCGGCCGCCGTCAACAACCACTTCTCCATGCTCCGCCTCGACTCCTCCTCCTCCCTCAAACGCCCCTCGCCGCCGTCCTCCCACCAGCCCAACCCCAAGAAAGAGAAGCTCTCTCCTCCTCTCTTCCCCGGCTTCTCCAAGATCACTCCTCTCCCTCCTCTCCCCAAATCGGGTCGCCCCACCCGGACCCGGACCCGAAACCCCCTCCTCCGCCGCTGCATTTCCGCCATCGATTCCACCGCCGCCGCCGCCGCCGCTTCTCCGCCGTCGGTGGTCTCCACGAGGCCGCCCCGCCCCGCGCACCACCGCACCGCCTCCGATCCCGCCGCCTCTCCCGCCGCCAAGTCCGCCTCCCGCACCTCCTCCAGCTCCGGCGATGACGACTCCACCCCCAATACTAAGAGGAGGCTTAAGAGGATCAAGGATCGGTTCAGAGAGATGACGCTGTGGTTTGAGCAAGTCATGCTTGAAGATGCTGAGGACGATGGTGATGACGTCACGCCAGTGGAGGAGGAAAAAGCAGCACCAGAGAATCAACATGAAGATGAAGAAGAAGAGGAGGAAGAAGAAGAGGATGTTCAAGCGGGCCTTGAAATCACTCCAGTCACAAAGGAGGATTGTGATCAGAAGAGGTTTGAGGAATCAGTGAGTGTGGGGAAGGTTGGGGAGTGCATTGTGATACATTTCAGCTGCCACTGTGGGGTTCCCTATCAGTTTCTTCTTGCTGGAGGCAATTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.51

Weight (kDa)

5.56

Isoelectric Point (pI)

73.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	522
AccII	CGCG	2 cut(s)	26, 323
AclWI	GGATC	3 cut(s)	338, 449, 456
AcoI	YGGCCR	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	519
AfiI	CCNNNNNNNGG	4 cut(s)	193, 194, 213, 724
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	494, 605, 617
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	133, 393, 714, 772
AluI	AGCT	4 cut(s)	133, 393, 714, 772
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	338, 449, 456
AoxI	GGCC	3 cut(s)	27, 308, 610
ApeKI	GCWGC	3 cut(s)	240, 545, 714
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	3 cut(s)	210, 216, 610
AsuC2I	CCSGG	3 cut(s)	153, 208, 214
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	210, 216
BauI	CACGAG	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	227, 557, 701
BccI	CCATC	2 cut(s)	260, 503
BceAI	ACGGC	3 cut(s)	17, 82, 274
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	3 cut(s)	153, 208, 214
BcoDI	GTCTC	1 cut(s)	304
BfrI	CTTAAG	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	153, 208, 214
Bme18I	GGWCC	2 cut(s)	210, 216
BmgT120I	GGNCC	3 cut(s)	210, 216, 610
BmiI	GGNNCC	3 cut(s)	212, 218, 729
BmrFI	CCNGG	3 cut(s)	153, 208, 214
BmsI	GCATC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	3 cut(s)	373, 609, 771
Bpu10I	CCTNAGC	1 cut(s)	501
BpuMI	CCSGG	3 cut(s)	153, 208, 214
Bsa29I	ATCGAT	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	24, 151
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 32, 56, 62, 86
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 194, 213, 724
Bse1I	ACTGG	2 cut(s)	527, 626
Bse8I	GATNNNNATC	1 cut(s)	645
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	24, 151
BseGI	GGATG	1 cut(s)	604
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	4 cut(s)	193, 194, 213, 724
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	527, 626
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	227, 557, 701
Bsh1236I	CGCG	2 cut(s)	26, 323
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	29, 310, 612
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	4 cut(s)	153, 208, 214, 396
BslI	CCNNNNNNNGG	4 cut(s)	193, 194, 213, 724
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	29, 310, 612
Bso31I	GGTCTC	1 cut(s)	304
Bsp143I	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
BspANI	GGCC	3 cut(s)	29, 310, 612
BspCNI	CTCAG	1 cut(s)	493
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	2 cut(s)	26, 323
BspLI	GGNNCC	3 cut(s)	212, 218, 729
BspPI	GGATC	3 cut(s)	338, 449, 456
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	527, 626
BssECI	CCNNGG	2 cut(s)	24, 151
BssMI	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	4 cut(s)	152, 573, 588, 647
BstACI	GRCGYC	1 cut(s)	519
BstAFI	CTTAAG	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	2 cut(s)	423, 501
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	2 cut(s)	26, 323
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	6 cut(s)	10, 168, 346, 444, 451, 649
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 275, 278, 359, 371, 487
BstSCI	CCNGG	3 cut(s)	151, 206, 212
BstUI	CGCG	2 cut(s)	26, 323
BstV1I	GCAGC	3 cut(s)	227, 557, 701
BstZI	CGGCCG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	29, 310, 612
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	3 cut(s)	534, 675, 718
Cac8I	GCNNGC	1 cut(s)	610
CciNI	GCGGCCGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	210, 216, 610
Cfr42I	CCGCGG	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	475
CviAII	CATG	4 cut(s)	52, 487, 563, 775
DdeI	CTNAG	2 cut(s)	423, 501
DpnI	GATC	6 cut(s)	9, 167, 345, 443, 450, 648
DpnII	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	4 cut(s)	152, 573, 588, 647
EarI	CTCTTC	4 cut(s)	152, 573, 588, 647
EciI	GGCGGA	5 cut(s)	47, 224, 238, 276, 361
EclXI	CGGCCG	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	210, 216
Eco52I	CGGCCG	1 cut(s)	27
FaeI	CATG	4 cut(s)	55, 490, 566, 778
FaiI	YATR	4 cut(s)	53, 488, 564, 776
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 597, 629
FatI	CATG	4 cut(s)	51, 486, 562, 774
FauI	CCCGC	6 cut(s)	323, 328, 355, 367, 386, 601
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	324
GsuI	CTGGAG	3 cut(s)	373, 609, 771
HaeIII	GGCC	3 cut(s)	29, 310, 612
HapII	CCGG	4 cut(s)	153, 208, 214, 396
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	4 cut(s)	55, 490, 566, 778
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	5 cut(s)	65, 257, 407, 556, 665
HpaII	CCGG	4 cut(s)	153, 208, 214, 396
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	343, 458, 651
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	676
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	243, 696
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 275, 278, 359, 371, 487
HpyF3I	CTNAG	2 cut(s)	423, 501
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	4 cut(s)	55, 490, 566, 778
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	646
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
LmnI	GCTCC	2 cut(s)	60, 398
Lsp1109I	GCAGC	3 cut(s)	227, 557, 701
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	520, 628
MalI	GATC	6 cut(s)	9, 167, 345, 443, 450, 648
MboI	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
MfeI	CAATTG	1 cut(s)	757
MluCI	AATT	1 cut(s)	757
MlyI	GAGTC	2 cut(s)	59, 401
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	2 cut(s)	527, 567
MspA1I	CMGCKG	3 cut(s)	26, 240, 714
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	4 cut(s)	153, 208, 214, 396
MspR9I	CCNGG	3 cut(s)	153, 208, 214
MunI	CAATTG	1 cut(s)	757
MvnI	CGCG	2 cut(s)	26, 323
MwoI	GCNNNNNNNGC	6 cut(s)	272, 275, 278, 359, 371, 487
NciI	CCSGG	3 cut(s)	153, 208, 214
NdeII	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
NlaIII	CATG	4 cut(s)	55, 490, 566, 778
NlaIV	GGNNCC	3 cut(s)	212, 218, 729
NmuCI	GTSAC	2 cut(s)	520, 628
NotI	GCGGCCGC	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	257, 556, 665
PleI	GAGTC	2 cut(s)	59, 401
PpsI	GAGTC	2 cut(s)	59, 401
PspN4I	GGNNCC	3 cut(s)	212, 218, 729
PspPI	GGNCC	3 cut(s)	210, 216, 610
PvuII	CAGCTG	1 cut(s)	714
RseI	CAYNNNNRTG	2 cut(s)	527, 567
SacII	CCGCGG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	6 cut(s)	7, 165, 343, 441, 448, 646
Sau96I	GGNCC	3 cut(s)	210, 216, 610
SchI	GAGTC	2 cut(s)	59, 401
ScrFI	CCNGG	3 cut(s)	153, 208, 214
SetI	ASST	8 cut(s)	135, 386, 395, 522, 659, 687, 716, 774
SfaNI	GCATC	1 cut(s)	487
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	210, 216
SmiMI	CAYNNNNRTG	2 cut(s)	527, 567
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	757
StyD4I	CCNGG	3 cut(s)	151, 206, 212
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	63, 255
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	757
TfiI	GAWTC	3 cut(s)	257, 556, 665
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	534, 675, 725
TseFI	GTSAC	2 cut(s)	520, 628
TseI	GCWGC	3 cut(s)	240, 545, 714
Tsp45I	GTSAC	2 cut(s)	520, 628
TspDTI	ATGAA	2 cut(s)	579, 585
TspRI	CASTG	3 cut(s)	534, 675, 725
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	210, 216
ZraI	GACGTC	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.