Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015594.1

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Forward (+)

16938 .. 18292

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015594.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgctgaccaccaccacctgtggctctgaacccatcaccatgaaaacgtcgccgccgccgtcctcctcctcagctccagacccttcttctctcctcggtttcggctactccaagatctccctccctctccaccaccaccaccaccaccaccctcaaccccttctccgccgctgcatttccgacccctacactcctccggcgccgccgcaaaccaacccatttctctccgccggtcactctcccgatcgcaacccacccaagacttcctccccgttcccgacccacttcaactcctccctcccgcctctccctcctccgcaggcgccgtccctccgccgctccgtctccgatctcaacccctctccggccaagaccttctcccgctcctccagctccaacgagatgtccgtcgagactgactccggcacccccaattccaagaggctgaagaggatgaagggtcgcctgaaagagatgagtgagtggtgcaggcagctcatgcgtgaagaagatttggaacaggatgaagaacttgaaattggagccggtcaagatattcctgacattgatgccattcgagatattcccaatgatacttctactgaggatagcagtgagaaagaattttcagaatctgtgagtgtggagaagaaggatgactctctggtcattcacttcaggtgccactgtgacaaagcctatcagttccttctcaacggaggtgactgctactacaagctcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.55

Weight (kDa)

5.87

Isoelectric Point (pI)

73.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AccB1I	GGYRCC	4 cut(s)	199, 322, 425, 681
AccBSI	CCGCTC	2 cut(s)	339, 384
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	2 cut(s)	467, 661
AcyI	GRCGYC	2 cut(s)	200, 323
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	289, 536
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	4 cut(s)	74, 393, 496, 739
AluI	AGCT	4 cut(s)	74, 393, 496, 739
Alw26I	GTCTC	2 cut(s)	349, 407
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	171, 493
ApoI	RAATTY	1 cut(s)	623
AspLEI	GCGC	2 cut(s)	202, 325
AsuHPI	GGTGA	2 cut(s)	28, 734
BanI	GGYRCC	4 cut(s)	199, 322, 425, 681
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	158, 505
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	43, 310
BcoDI	GTCTC	2 cut(s)	349, 407
BfoI	RGCGCY	2 cut(s)	203, 326
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	8 cut(s)	53, 56, 169, 172, 203, 206, 337, 494
BlsI	GCNGC	8 cut(s)	54, 57, 170, 173, 204, 207, 338, 495
BmiI	GGNNCC	5 cut(s)	201, 324, 427, 544, 683
BmsI	GCATC	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpmI	CTGGAG	2 cut(s)	60, 373
Bpu10I	CCTNAGC	1 cut(s)	70
BsaHI	GRCGYC	2 cut(s)	200, 323
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	2 cut(s)	230, 545
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	459, 529, 661
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	84, 594
BseRI	GAGGAG	7 cut(s)	55, 58, 83, 183, 283, 303, 376
BseXI	GCAGC	2 cut(s)	158, 505
BsgI	GTGCAG	1 cut(s)	508
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	4 cut(s)	199, 322, 425, 681
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	5 cut(s)	197, 231, 365, 423, 546
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	2 cut(s)	349, 407
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	114, 244, 349
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	83, 595
BspLI	GGNNCC	5 cut(s)	201, 324, 427, 544, 683
BspT107I	GGYRCC	4 cut(s)	199, 322, 425, 681
BsrBI	CCGCTC	2 cut(s)	339, 384
BsrFI	RCCGGY	2 cut(s)	230, 545
BssAI	RCCGGY	2 cut(s)	230, 545
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	114, 244, 349
BssNI	GRCGYC	2 cut(s)	200, 323
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	2 cut(s)	200, 323
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	321, 491
BstDEI	CTNAG	2 cut(s)	70, 603
BstF5I	GGATG	3 cut(s)	459, 529, 661
BstH2I	RGCGCY	2 cut(s)	203, 326
BstHHI	GCGC	2 cut(s)	202, 325
BstKTI	GATC	3 cut(s)	117, 247, 352
BstMAI	GTCTC	2 cut(s)	349, 407
BstMBI	GATC	3 cut(s)	114, 244, 349
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 499
BstV1I	GCAGC	2 cut(s)	158, 505
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	459, 529, 661
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	619, 685
Cac8I	GCNNGC	2 cut(s)	321, 491
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	2 cut(s)	202, 325
Cfr10I	RCCGGY	2 cut(s)	230, 545
CviAII	CATG	3 cut(s)	40, 499, 742
DdeI	CTNAG	2 cut(s)	70, 603
DinI	GGCGCC	2 cut(s)	201, 324
DpnI	GATC	3 cut(s)	116, 246, 351
DpnII	GATC	3 cut(s)	114, 244, 349
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	3 cut(s)	155, 217, 323
Eco57I	CTGAAG	2 cut(s)	467, 661
EgeI	GGCGCC	2 cut(s)	201, 324
EheI	GGCGCC	2 cut(s)	201, 324
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	3 cut(s)	43, 502, 745
FaiI	YATR	3 cut(s)	41, 500, 743
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	39, 498, 741
FauI	CCCGC	2 cut(s)	309, 389
Fnu4HI	GCNGC	8 cut(s)	53, 56, 169, 172, 203, 206, 337, 494
FokI	GGATG	3 cut(s)	466, 536, 668
Fsp4HI	GCNGC	8 cut(s)	53, 56, 169, 172, 203, 206, 337, 494
GlaI	GCGC	2 cut(s)	201, 324
GluI	GCNGC	8 cut(s)	53, 56, 169, 172, 203, 206, 337, 494
GsuI	CTGGAG	2 cut(s)	60, 373
HaeII	RGCGCY	2 cut(s)	203, 326
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	5 cut(s)	197, 231, 365, 423, 546
HhaI	GCGC	2 cut(s)	202, 325
Hin1I	GRCGYC	2 cut(s)	200, 323
Hin1II	CATG	3 cut(s)	43, 502, 745
Hin6I	GCGC	2 cut(s)	200, 323
HinP1I	GCGC	2 cut(s)	200, 323
HinfI	GANTC	3 cut(s)	419, 632, 659
HpaII	CCGG	5 cut(s)	197, 231, 365, 423, 546
HphI	GGTGA	2 cut(s)	28, 734
Hpy188I	TCNGA	4 cut(s)	28, 181, 349, 631
Hpy188III	TCNNGA	7 cut(s)	77, 242, 277, 412, 551, 560, 578
Hpy99I	CGWCG	2 cut(s)	52, 413
HpyAV	CCTTC	6 cut(s)	93, 170, 385, 451, 646, 719
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	174, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 499
HpyF3I	CTNAG	2 cut(s)	70, 603
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	200, 323
Hsp92II	CATG	3 cut(s)	43, 502, 745
HspAI	GCGC	2 cut(s)	200, 323
KasI	GGCGCC	2 cut(s)	199, 322
Kzo9I	GATC	3 cut(s)	114, 244, 349
LmnI	GCTCC	5 cut(s)	79, 344, 389, 398, 542
Lsp1109I	GCAGC	2 cut(s)	158, 505
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	233, 689, 722
MalI	GATC	3 cut(s)	116, 246, 351
MbiI	CCGCTC	2 cut(s)	339, 384
MboI	GATC	3 cut(s)	114, 244, 349
MboII	GAAGA	6 cut(s)	78, 460, 518, 521, 539, 661
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	3 cut(s)	433, 537, 623
Mly113I	GGCGCC	2 cut(s)	200, 323
MlyI	GAGTC	2 cut(s)	413, 653
MmeI	TCCRAC	2 cut(s)	204, 420
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	5 cut(s)	197, 231, 365, 423, 546
MwoI	GCNNNNNNNGC	2 cut(s)	390, 499
NarI	GGCGCC	2 cut(s)	200, 323
NdeII	GATC	3 cut(s)	114, 244, 349
NlaIII	CATG	3 cut(s)	43, 502, 745
NlaIV	GGNNCC	5 cut(s)	201, 324, 427, 544, 683
NmuCI	GTSAC	3 cut(s)	233, 689, 722
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 405
PfeI	GAWTC	1 cut(s)	632
PkrI	GCNGC	8 cut(s)	54, 57, 170, 173, 204, 207, 338, 495
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	2 cut(s)	413, 653
PluTI	GGCGCC	2 cut(s)	203, 326
PpsI	GAGTC	2 cut(s)	413, 653
PspN4I	GGNNCC	5 cut(s)	201, 324, 427, 544, 683
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	8 cut(s)	53, 56, 169, 172, 203, 206, 337, 494
Sau3AI	GATC	3 cut(s)	114, 244, 349
SchI	GAGTC	2 cut(s)	413, 653
SetI	ASST	9 cut(s)	20, 50, 76, 377, 395, 498, 683, 724, 741
SfaNI	GCATC	1 cut(s)	559
SfoI	GGCGCC	2 cut(s)	201, 324
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	433, 537, 623
SspDI	GGCGCC	2 cut(s)	199, 322
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	411, 577
TasI	AATT	3 cut(s)	433, 537, 623
TauI	GCSGC	6 cut(s)	55, 58, 171, 205, 208, 339
TfiI	GAWTC	1 cut(s)	632
TscAI	CASTG	2 cut(s)	619, 692
TseFI	GTSAC	3 cut(s)	233, 689, 722
TseI	GCWGC	2 cut(s)	171, 493
Tsp45I	GTSAC	3 cut(s)	233, 689, 722
TspDTI	ATGAA	3 cut(s)	56, 470, 540
TspGWI	ACGGA	3 cut(s)	331, 397, 732
TspRI	CASTG	2 cut(s)	619, 692
XapI	RAATTY	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.