Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

23611272 .. 23612708

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1230200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAACCACCACCACCACCACCAGATTCCATCCAACCACCCAGAACAAGACTCTTCTCTCCCTGCATCTTCTTCTGGCTACCGCAGGATCTCCCTCCCTCTTCTCCGCCGCTGCATCTCCGACCCCTACAACCCTCCGTCTGCGACCACCCCCAACTACGCATTTGAGCATTCTCTCTCTGCTGCTCGCTGTGGCGGTTCTTTGTGCAACATGACTCCGTCCTACTCTCCTGACCGACTCCACTTCCCCAAGACTCCGTTCCATTCCCCGGCAGCGGTCCTGCCTCCTCTTCCTCCACCGCAGACTCTCCAGCGCTCTGTCTCGGATCTCAACCCCTCTCCGGCCAAGACCTCCTCCCGCTCCTCCACCTCCTCCCAAGATTTCCACTTCTCCACCGACATTGACACCCCCAATTCTAAGAGGCTGCAGAGGATGAAGGGCCGATTGAGAGAGATGAGCCTGTGGTGCCAGCAACTGATGCGGGAAGAAGACTTAATGGAAGAAGATGAAGATCACGAGGAGCAAGCGGCCGAAGAAAAAAAAGAAGAAGAAGAAGAAGCGGAAGAAGAACAAGTGCAAACTGTTGATGCTACTGATCAAGATTTTCATGACAATGCTACTGCTACTGCTGAGGATGACGGGGGGAAAGAATTTGCGGAATCTGTGAGTGTGGAGAAGAAGGATGACTGCTTGGTAATTCACTTCAGGTGTCACTGTGACAAAGCGTATCAGTTCCTTCTCAGTGGAGGTGACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.06

Weight (kDa)

5.06

Isoelectric Point (pI)

71.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	465
AccBSI	CCGCTC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	95, 333
AcoI	YGGCCR	2 cut(s)	342, 528
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	688
AfeI	AGCGCT	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	268, 274, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	1 cut(s)	766
AluI	AGCT	1 cut(s)	766
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	95, 333
AlwNI	CAGNNNCTG	1 cut(s)	475
Aor51HI	AGCGCT	1 cut(s)	314
AoxI	GGCC	3 cut(s)	342, 439, 528
ApeKI	GCWGC	4 cut(s)	111, 182, 272, 424
ApoI	RAATTY	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	277, 439
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	495
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	98, 169, 284, 411
BccI	CCATC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	6 cut(s)	109, 112, 183, 273, 425, 528
BlsI	GCNGC	6 cut(s)	110, 113, 184, 274, 426, 529
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 439
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	4 cut(s)	74, 123, 468, 577
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 274, 340
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	4 cut(s)	29, 438, 640, 688
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	268, 274, 340
BseMII	CTCAG	2 cut(s)	621, 754
BseRI	GAGGAG	5 cut(s)	276, 343, 352, 361, 533
BseX3I	CGGCCG	1 cut(s)	528
BseXI	GCAGC	4 cut(s)	98, 169, 284, 411
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	344, 441, 530
BshNI	GGYRCC	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	269, 341
BslI	CCNNNNNNNGG	3 cut(s)	268, 274, 340
BsmAI	GTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	344, 441, 530
Bsp143I	GATC	4 cut(s)	87, 325, 511, 595
BspANI	GGCC	3 cut(s)	344, 441, 530
BspCNI	CTCAG	2 cut(s)	622, 753
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	2 cut(s)	95, 333
BspT107I	GGYRCC	1 cut(s)	465
BsrBI	CCGCTC	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	87, 325, 511, 595
BssSI	CACGAG	1 cut(s)	515
Bst2BI	CACGAG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	583, 716
Bst6I	CTCTTC	3 cut(s)	58, 105, 294
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstC8I	GCNNGC	3 cut(s)	187, 470, 525
BstDEI	CTNAG	3 cut(s)	417, 630, 740
BstF5I	GGATG	4 cut(s)	29, 438, 640, 688
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	4 cut(s)	90, 328, 514, 598
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	87, 325, 511, 595
BstMCI	CGRYCG	1 cut(s)	531
BstMWI	GCNNNNNNNGC	2 cut(s)	465, 478
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	4 cut(s)	98, 169, 284, 411
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	87, 325
BstYI	RGATCY	2 cut(s)	87, 325
BstZI	CGGCCG	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	344, 441, 530
BtsCI	GGATG	4 cut(s)	29, 438, 640, 688
BtsIMutI	CAGTG	2 cut(s)	712, 748
Cac8I	GCNNGC	3 cut(s)	187, 470, 525
CaiI	CAGNNNCTG	1 cut(s)	475
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	277, 439
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	3 cut(s)	211, 608, 769
CviJI	RGCY	7 cut(s)	78, 344, 424, 441, 459, 530, 766
CviKI_1	RGCY	7 cut(s)	78, 344, 424, 441, 459, 530, 766
DdeI	CTNAG	3 cut(s)	417, 630, 740
DpnI	GATC	4 cut(s)	89, 327, 513, 597
DpnII	GATC	4 cut(s)	87, 325, 511, 595
EaeI	YGGCCR	2 cut(s)	342, 528
EagI	CGGCCG	1 cut(s)	528
Eam1104I	CTCTTC	3 cut(s)	58, 105, 294
EarI	CTCTTC	3 cut(s)	58, 105, 294
EciI	GGCGGA	1 cut(s)	95
EclXI	CGGCCG	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	314
Eco52I	CGGCCG	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	688
FaeI	CATG	3 cut(s)	214, 611, 772
FaiI	YATR	3 cut(s)	212, 609, 770
FatI	CATG	3 cut(s)	210, 607, 768
FauI	CCCGC	2 cut(s)	365, 474
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	6 cut(s)	109, 112, 183, 273, 425, 528
FokI	GGATG	4 cut(s)	16, 445, 647, 695
Fsp4HI	GCNGC	6 cut(s)	109, 112, 183, 273, 425, 528
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	6 cut(s)	109, 112, 183, 273, 425, 528
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	344, 441, 530
HapII	CCGG	2 cut(s)	269, 341
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	214, 611, 772
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	7 cut(s)	25, 50, 214, 237, 253, 304, 659
HpaII	CCGG	2 cut(s)	269, 341
HphI	GGTGA	1 cut(s)	761
Hpy188I	TCNGA	2 cut(s)	121, 325
Hpy188III	TCNNGA	4 cut(s)	230, 515, 599, 608
HpyAV	CCTTC	3 cut(s)	430, 673, 746
HpyCH4III	ACNGT	2 cut(s)	583, 716
HpyCH4V	TGCA	5 cut(s)	65, 114, 207, 427, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	465, 478
HpyF3I	CTNAG	3 cut(s)	417, 630, 740
Hsp92II	CATG	3 cut(s)	214, 611, 772
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	87, 325, 511, 595
LmnI	GCTCC	2 cut(s)	365, 520
Lsp1109I	GCAGC	4 cut(s)	98, 169, 284, 411
LweI	GCATC	4 cut(s)	74, 123, 468, 577
MaeIII	GTNAC	3 cut(s)	710, 716, 749
MalI	GATC	4 cut(s)	89, 327, 513, 597
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	4 cut(s)	87, 325, 511, 595
MflI	RGATCY	2 cut(s)	87, 325
MluCI	AATT	3 cut(s)	412, 650, 696
MlyI	GAGTC	5 cut(s)	44, 208, 231, 247, 298
MmeI	TCCRAC	2 cut(s)	57, 144
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	111, 275
MspI	CCGG	2 cut(s)	269, 341
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	465, 478
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	4 cut(s)	87, 325, 511, 595
NlaIII	CATG	3 cut(s)	214, 611, 772
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	3 cut(s)	710, 716, 749
PagI	TCATGA	1 cut(s)	607
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	25, 659
PflFI	GACNNNGTC	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	110, 113, 184, 274, 426, 529
PleI	GAGTC	5 cut(s)	44, 208, 231, 247, 298
PpsI	GAGTC	5 cut(s)	44, 208, 231, 247, 298
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	2 cut(s)	277, 439
PstI	CTGCAG	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	87, 325
PsyI	GACNNNGTC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	6 cut(s)	109, 112, 183, 273, 425, 528
Sau3AI	GATC	4 cut(s)	87, 325, 511, 595
Sau96I	GGNCC	2 cut(s)	277, 439
SchI	GAGTC	5 cut(s)	44, 208, 231, 247, 298
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	5 cut(s)	353, 371, 710, 751, 768
SfaNI	GCATC	4 cut(s)	74, 123, 468, 577
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	3 cut(s)	412, 650, 696
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	583, 716
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	3 cut(s)	412, 650, 696
TauI	GCSGC	2 cut(s)	111, 530
TfiI	GAWTC	2 cut(s)	25, 659
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	719, 748
TseFI	GTSAC	3 cut(s)	710, 716, 749
TseI	GCWGC	4 cut(s)	111, 182, 272, 424
Tsp45I	GTSAC	3 cut(s)	710, 716, 749
TspDTI	ATGAA	4 cut(s)	17, 449, 522, 596
TspGWI	ACGGA	3 cut(s)	126, 207, 246
TspRI	CASTG	2 cut(s)	719, 748
Tth111I	GACNNNGTC	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.