Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

930104 .. 930598

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGGACTGCACTGGAGAAAGGGAAAAAGAAGGGTACTCAGTGGAGGAGACGGCGGCTGTGAGGAATCGGTTGTCCGGGCTCCGCCTCGACAGCAGCAGCTTCAAGTCTTCCTCCGCTGCTGATCCCAAGAATCCCGTGAAAACATTGAAGAGGCGGTCGCCCACCCAATCTCCACCATTATCCCAACCCAACCCCAAGAAAGAGAAGCTCTCTCACCCTCCTCATCCTCCTTCTCCTCTTCTCCGCCGCTGCATTTCCGATACCTTCTGTTTCAACCCAACTCCTCCGCCTCCCCAGTCTCATCCGGAACCTACGGTCACGGTTACACCACCGCTTGCCCCACCAACCGGTAATGCCTCCGCTGCCGCCTCTGCCTCAACCATTAATCCGAAGCCCAAACTCCACCGCTCCGTATCCGTTCCCAATCCTCGCTCACCGAAAACCGTCTCCGGCAGTGACGAGGACGACAATACGGCGGTTCTTAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.53

Weight (kDa)

9.47

Isoelectric Point (pI)

68.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	307
AclWI	GGATC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	106, 151, 277
AluBI	AGCT	2 cut(s)	102, 211
AluI	AGCT	2 cut(s)	102, 211
Alw26I	GTCTC	3 cut(s)	44, 306, 454
AlwI	GGATC	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	307
ApeKI	GCWGC	5 cut(s)	96, 99, 119, 252, 365
AseI	ATTAAT	1 cut(s)	387
AsiGI	ACCGGT	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	209, 429
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	5 cut(s)	106, 108, 111, 239, 352
BceAI	ACGGC	2 cut(s)	69, 492
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	44, 306, 454
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	8 cut(s)	57, 97, 100, 120, 250, 253, 366, 369
BlsI	GCNGC	8 cut(s)	58, 98, 101, 121, 251, 254, 367, 370
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	83, 312
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	79
BsaWI	WCCGGW	2 cut(s)	307, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	19, 298
BseAI	TCCGGA	1 cut(s)	307
BseGI	GGATG	2 cut(s)	226, 304
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	19, 298
BseRI	GAGGAG	4 cut(s)	62, 213, 228, 276
BseXI	GCAGC	5 cut(s)	106, 108, 111, 239, 352
Bsh1285I	CGRYCG	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	161
BsiSI	CCGG	4 cut(s)	78, 308, 351, 453
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	3 cut(s)	44, 306, 454
BsmBI	CGTCTC	2 cut(s)	44, 454
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	83, 312
BspPI	GGATC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	19, 298
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	319, 325, 448
Bst6I	CTCTTC	2 cut(s)	146, 246
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	40, 485
BstF5I	GGATG	2 cut(s)	226, 304
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	3 cut(s)	44, 306, 454
BstMBI	GATC	1 cut(s)	124
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 365, 374
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	106, 108, 111, 239, 352
BstV2I	GAAGAC	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	226, 304
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	3 cut(s)	12, 48, 463
Cac8I	GCNNGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	350
CviJI	RGCY	5 cut(s)	59, 82, 102, 211, 397
CviKI_1	RGCY	5 cut(s)	59, 82, 102, 211, 397
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	40, 485
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	146, 246
EarI	CTCTTC	2 cut(s)	146, 246
EciI	GGCGGA	4 cut(s)	20, 74, 236, 279
Eco24I	GRGCYC	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	84
Esp3I	CGTCTC	2 cut(s)	44, 454
Fnu4HI	GCNGC	8 cut(s)	57, 97, 100, 120, 250, 253, 366, 369
FokI	GGATG	2 cut(s)	213, 291
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	8 cut(s)	57, 97, 100, 120, 250, 253, 366, 369
GluI	GCNGC	8 cut(s)	57, 97, 100, 120, 250, 253, 366, 369
GsuI	CTGGAG	1 cut(s)	36
HapII	CCGG	4 cut(s)	78, 308, 351, 453
HinfI	GANTC	2 cut(s)	67, 133
HpaII	CCGG	4 cut(s)	78, 308, 351, 453
HphI	GGTGA	2 cut(s)	209, 429
Hpy188I	TCNGA	2 cut(s)	262, 393
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	26, 243, 277
HpyCH4III	ACNGT	3 cut(s)	319, 325, 448
HpyCH4V	TGCA	2 cut(s)	12, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 365, 374
HpyF3I	CTNAG	2 cut(s)	40, 485
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	87, 416
LpnPI	CCDG	5 cut(s)	91, 311, 321, 364, 466
Lsp1109I	GCAGC	5 cut(s)	106, 108, 111, 239, 352
MaeIII	GTNAC	3 cut(s)	319, 325, 458
MalI	GATC	1 cut(s)	126
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	102, 163, 233
MhlI	GDGCHC	1 cut(s)	84
MroI	TCCGGA	1 cut(s)	307
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	3 cut(s)	119, 252, 365
MspI	CCGG	4 cut(s)	78, 308, 351, 453
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	93, 365, 374
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	83, 312
NmuCI	GTSAC	2 cut(s)	319, 458
PfeI	GAWTC	2 cut(s)	67, 133
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	8 cut(s)	58, 98, 101, 121, 251, 254, 367, 370
PshBI	ATTAAT	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	83, 312
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	8 cut(s)	57, 97, 100, 120, 250, 253, 366, 369
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	4 cut(s)	104, 213, 269, 316
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	319, 325, 448
TaqI	TCGA	1 cut(s)	90
TauI	GCSGC	3 cut(s)	59, 252, 371
TfiI	GAWTC	2 cut(s)	67, 133
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	19, 48, 463
TseFI	GTSAC	2 cut(s)	319, 458
TseI	GCWGC	5 cut(s)	96, 99, 119, 252, 365
Tsp45I	GTSAC	2 cut(s)	319, 458
TspGWI	ACGGA	2 cut(s)	403, 409
TspRI	CASTG	3 cut(s)	19, 48, 463
VspI	ATTAAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.