Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

9160992 .. 9162891

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTGACCACCACCACCTGTGGCTCTGAACCCATCACCATGAAAACGTCGCCGCCGCCCTCCTCCTCCTCAGCTCCAGACCCTTCTTCTCTCCTCGGTTTCGGCTACTCCAAGATCTCCCTCCCTCTCCACCACCCTCACCCCCTTCTCCGCCGCTGCATTTCCGACCCCTACACTCCTCCGGCGCCGCCGCAAACCAACCCATTTCTCTCCGCCGGTCACTCTCCCGATGATCGCAACCCACCCAAGACTTCCTCCCCGTTCCCGACCCACTTCAACTCCTCCCTCCCGCCTCTCCCTCCGCCGCAGGCGCCGACCCTCCGCCGCTCCGTCTCCGATCTCAACCCCTCTCCGGCCAAGACCTTCTCCCGCTCCTCCAGCTCCAACGAGATGTCCGTCGAGACTGACTCCGACACCCCCAATTCCAAGAGGCTGAAGAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAAGATTTGGAACAGGATGAAGAACTTGAAATTGGAGCCGGTCAAGATATTCCTGACATTGATGCCACTCAAGATATTCCCAATGATACTTCTACTGAGGATAGCAGTGAGAAAGAATTTTCAGAATCTGTGAGTGTGGAGAAGAAGGATGACTCTCTGGTCATTCACTTCAGGTGCCACTGTGACAAAGCCTATCAGTTCCTTCTCAATGGAGGTGACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.02

Weight (kDa)

5.17

Isoelectric Point (pI)

72.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
AccB1I	GGYRCC	3 cut(s)	184, 310, 669
AccBSI	CCGCTC	2 cut(s)	327, 372
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	2 cut(s)	455, 649
AcyI	GRCGYC	2 cut(s)	185, 311
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	277, 524
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	4 cut(s)	74, 381, 484, 727
AluI	AGCT	4 cut(s)	74, 381, 484, 727
Alw26I	GTCTC	2 cut(s)	337, 395
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	156, 481
ApoI	RAATTY	1 cut(s)	611
AspLEI	GCGC	2 cut(s)	187, 313
AsuHPI	GGTGA	3 cut(s)	28, 131, 722
BanI	GGYRCC	3 cut(s)	184, 310, 669
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	143, 493
BccI	CCATC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	337, 395
BfoI	RGCGCY	2 cut(s)	188, 314
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	9 cut(s)	53, 56, 154, 157, 188, 191, 305, 325, 482
BlsI	GCNGC	9 cut(s)	54, 57, 155, 158, 189, 192, 306, 326, 483
BmiI	GGNNCC	4 cut(s)	186, 312, 532, 671
BmsI	GCATC	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	2 cut(s)	60, 361
Bpu10I	CCTNAGC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	549
BsaHI	GRCGYC	2 cut(s)	185, 311
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	2 cut(s)	215, 533
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	447, 517, 649
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	84, 582
BseRI	GAGGAG	7 cut(s)	52, 55, 58, 83, 168, 271, 364
BseXI	GCAGC	2 cut(s)	143, 493
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	3 cut(s)	184, 310, 669
BsiSI	CCGG	4 cut(s)	182, 216, 353, 534
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	2 cut(s)	337, 395
BsmBI	CGTCTC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	114, 232, 337
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	83, 583
BspLI	GGNNCC	4 cut(s)	186, 312, 532, 671
BspT107I	GGYRCC	3 cut(s)	184, 310, 669
BsrBI	CCGCTC	2 cut(s)	327, 372
BsrFI	RCCGGY	2 cut(s)	215, 533
BssAI	RCCGGY	2 cut(s)	215, 533
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	114, 232, 337
BssNI	GRCGYC	2 cut(s)	185, 311
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	2 cut(s)	185, 311
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	309, 479
BstDEI	CTNAG	2 cut(s)	70, 591
BstF5I	GGATG	3 cut(s)	447, 517, 649
BstH2I	RGCGCY	2 cut(s)	188, 314
BstHHI	GCGC	2 cut(s)	187, 313
BstKTI	GATC	3 cut(s)	117, 235, 340
BstMAI	GTCTC	2 cut(s)	337, 395
BstMBI	GATC	3 cut(s)	114, 232, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 378, 487
BstV1I	GCAGC	2 cut(s)	143, 493
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	447, 517, 649
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	2 cut(s)	607, 673
Cac8I	GCNNGC	2 cut(s)	309, 479
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	187, 313
Cfr10I	RCCGGY	2 cut(s)	215, 533
CviAII	CATG	3 cut(s)	40, 487, 730
DdeI	CTNAG	2 cut(s)	70, 591
DinI	GGCGCC	2 cut(s)	186, 312
DpnI	GATC	3 cut(s)	116, 234, 339
DpnII	GATC	3 cut(s)	114, 232, 337
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	4 cut(s)	140, 202, 291, 311
Eco57I	CTGAAG	2 cut(s)	455, 649
EgeI	GGCGCC	2 cut(s)	186, 312
EheI	GGCGCC	2 cut(s)	186, 312
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	43, 490, 733
FaiI	YATR	3 cut(s)	41, 488, 731
FatI	CATG	3 cut(s)	39, 486, 729
FauI	CCCGC	2 cut(s)	297, 377
Fnu4HI	GCNGC	9 cut(s)	53, 56, 154, 157, 188, 191, 305, 325, 482
FokI	GGATG	3 cut(s)	454, 524, 656
Fsp4HI	GCNGC	9 cut(s)	53, 56, 154, 157, 188, 191, 305, 325, 482
GlaI	GCGC	2 cut(s)	186, 312
GluI	GCNGC	9 cut(s)	53, 56, 154, 157, 188, 191, 305, 325, 482
GsuI	CTGGAG	2 cut(s)	60, 361
HaeII	RGCGCY	2 cut(s)	188, 314
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	4 cut(s)	182, 216, 353, 534
HhaI	GCGC	2 cut(s)	187, 313
Hin1I	GRCGYC	2 cut(s)	185, 311
Hin1II	CATG	3 cut(s)	43, 490, 733
Hin6I	GCGC	2 cut(s)	185, 311
HinP1I	GCGC	2 cut(s)	185, 311
HinfI	GANTC	3 cut(s)	407, 620, 647
HpaII	CCGG	4 cut(s)	182, 216, 353, 534
HphI	GGTGA	3 cut(s)	28, 131, 722
Hpy188I	TCNGA	5 cut(s)	28, 166, 337, 412, 619
Hpy188III	TCNNGA	7 cut(s)	77, 227, 265, 400, 539, 548, 566
Hpy99I	CGWCG	2 cut(s)	52, 401
HpyAV	CCTTC	6 cut(s)	93, 155, 373, 439, 634, 707
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	159, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 378, 487
HpyF3I	CTNAG	2 cut(s)	70, 591
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	185, 311
Hsp92II	CATG	3 cut(s)	43, 490, 733
HspAI	GCGC	2 cut(s)	185, 311
KasI	GGCGCC	2 cut(s)	184, 310
Kzo9I	GATC	3 cut(s)	114, 232, 337
LmnI	GCTCC	5 cut(s)	79, 332, 377, 386, 530
Lsp1109I	GCAGC	2 cut(s)	143, 493
LweI	GCATC	1 cut(s)	547
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	218, 677, 710
MalI	GATC	3 cut(s)	116, 234, 339
MbiI	CCGCTC	2 cut(s)	327, 372
MboI	GATC	3 cut(s)	114, 232, 337
MboII	GAAGA	6 cut(s)	78, 448, 506, 509, 527, 649
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	3 cut(s)	421, 525, 611
Mly113I	GGCGCC	2 cut(s)	185, 311
MlyI	GAGTC	2 cut(s)	401, 641
MmeI	TCCRAC	3 cut(s)	189, 408, 435
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	4 cut(s)	182, 216, 353, 534
MwoI	GCNNNNNNNGC	3 cut(s)	310, 378, 487
NarI	GGCGCC	2 cut(s)	185, 311
NdeII	GATC	3 cut(s)	114, 232, 337
NlaIII	CATG	3 cut(s)	43, 490, 733
NlaIV	GGNNCC	4 cut(s)	186, 312, 532, 671
NmuCI	GTSAC	3 cut(s)	218, 677, 710
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	9 cut(s)	54, 57, 155, 158, 189, 192, 306, 326, 483
PleI	GAGTC	2 cut(s)	401, 641
PluTI	GGCGCC	2 cut(s)	188, 314
PpsI	GAGTC	2 cut(s)	401, 641
PspN4I	GGNNCC	4 cut(s)	186, 312, 532, 671
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	9 cut(s)	53, 56, 154, 157, 188, 191, 305, 325, 482
Sau3AI	GATC	3 cut(s)	114, 232, 337
SchI	GAGTC	2 cut(s)	401, 641
SetI	ASST	9 cut(s)	20, 50, 76, 365, 383, 486, 671, 712, 729
SfaNI	GCATC	1 cut(s)	547
SfoI	GGCGCC	2 cut(s)	186, 312
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	3 cut(s)	421, 525, 611
SspDI	GGCGCC	2 cut(s)	184, 310
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	399
TasI	AATT	3 cut(s)	421, 525, 611
TauI	GCSGC	7 cut(s)	55, 58, 156, 190, 193, 307, 327
TfiI	GAWTC	1 cut(s)	620
TscAI	CASTG	2 cut(s)	607, 680
TseFI	GTSAC	3 cut(s)	218, 677, 710
TseI	GCWGC	2 cut(s)	156, 481
Tsp45I	GTSAC	3 cut(s)	218, 677, 710
TspDTI	ATGAA	3 cut(s)	56, 458, 528
TspGWI	ACGGA	2 cut(s)	319, 385
TspRI	CASTG	2 cut(s)	607, 680
XapI	RAATTY	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.