Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

45549976 .. 45576650

Gene Structure 26675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG264200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAGAAAAGGCTGAAAAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAAGATTTGGAACAAGATGAAGAACTTGAAACTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTCCCAATGATACTTCTAATGAGGCTCAACAGTGTCTATCCTTTGATCTTAATAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGGAGAAGGATCGGAGGGTGATGAGCTTAGAAGGAATTCTAATGTCATCGAGATCCTAAAGAAGACAAGTTTCCATGGCTCTAGCGCGTTGAAAAACCCAGAAACAACCCTGGAGCATGAGACAAGGTTGCACCTATGTAATGATCCCGTGTATTTCAATCAATTATCGTCTTACAATGTCAATCAACTCATCAACAATTTCGCCTCGAATATGGAAGTGCAAAATCCTACCATTTTCAGTTACCATGGAACTATGGAAGTTCCTTTGCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.52

Weight (kDa)

4.87

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	323
AclWI	GGATC	3 cut(s)	253, 283, 374
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	104, 328, 394
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	2 cut(s)	64, 262
AluI	AGCT	2 cut(s)	64, 262
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	3 cut(s)	253, 283, 374
AlwNI	CAGNNNCTG	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	129, 368
BpuEI	CTTGAG	2 cut(s)	102, 129
BsaJI	CCNNGG	3 cut(s)	310, 345, 481
Bse1I	ACTGG	2 cut(s)	112, 218
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	310, 345, 481
BseGI	GGATG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	112, 218
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	196, 245, 288, 379
Bsp19I	CCATGG	2 cut(s)	310, 481
BspFNI	CGCG	1 cut(s)	323
BspPI	GGATC	3 cut(s)	253, 283, 374
BsrI	ACTGG	2 cut(s)	112, 218
BssECI	CCNNGG	3 cut(s)	310, 345, 481
BssMI	GATC	4 cut(s)	196, 245, 288, 379
BssT1I	CCWWGG	2 cut(s)	310, 481
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	2 cut(s)	310, 481
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	4 cut(s)	199, 248, 291, 382
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	4 cut(s)	196, 245, 288, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	310, 481
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	4 cut(s)	67, 311, 353, 482
CviJI	RGCY	5 cut(s)	13, 64, 176, 262, 315
CviKI_1	RGCY	5 cut(s)	13, 64, 176, 262, 315
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	4 cut(s)	198, 247, 290, 381
DpnII	GATC	4 cut(s)	196, 245, 288, 379
Eco130I	CCWWGG	2 cut(s)	310, 481
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	310, 481
ErhI	CCWWGG	2 cut(s)	310, 481
FaeI	CATG	4 cut(s)	70, 314, 356, 485
FaiI	YATR	7 cut(s)	68, 312, 354, 373, 449, 483, 491
FatI	CATG	4 cut(s)	66, 310, 352, 481
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	62
GsuI	CTGGAG	2 cut(s)	129, 368
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	70, 314, 356, 485
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	4 cut(s)	119, 128, 146, 286
HpyAV	CCTTC	3 cut(s)	19, 236, 261
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	57, 367, 457, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	70, 314, 356, 485
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	196, 245, 288, 379
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	43, 47, 93, 141, 221, 231, 332, 348, 359
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	112, 220, 476
MalI	GATC	4 cut(s)	198, 247, 290, 381
MboI	GATC	4 cut(s)	196, 245, 288, 379
MboII	GAAGA	5 cut(s)	16, 86, 89, 107, 310
MflI	RGATCY	1 cut(s)	288
MluCI	AATT	3 cut(s)	271, 398, 433
MnlI	CCTC	4 cut(s)	166, 238, 244, 451
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	67
NcoI	CCATGG	2 cut(s)	310, 481
NdeII	GATC	4 cut(s)	196, 245, 288, 379
NlaIII	CATG	4 cut(s)	70, 314, 356, 485
PdmI	GAANNNNTTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	196, 245, 288, 379
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	4 cut(s)	66, 264, 365, 372
SfaNI	GCATC	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	117, 144
SmoI	CTYRAG	2 cut(s)	117, 144
Sse9I	AATT	3 cut(s)	271, 398, 433
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	310, 481
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	285, 443
TasI	AATT	3 cut(s)	271, 398, 433
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	188
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	17, 38, 108
TspRI	CASTG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.