Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

1164757 .. 1165814

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1018300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTGACTTCACCGGAGGAAGAGAAAACGAAGGCTACTCAGTGGAGGAGACGGCGGCGGTGAGGAATCGGTTGTCCGGGCTCCGCCTTGAATGCACCTTCAAGTCTTCCTCCGTCGTTGATCCCAAGAATCCCACGAAAACATTGAAGAGGCGATCCCCCACCCAATCGCCGCCGGTATCCGAACCCAACGCCAAGAAAGAGAAGCTTTCTCTCCCTCCTACTCCTCCTCTTCTCCGCCGCTGCATTTCCGACACTTTCTTTTTCAACCCAACTCCTCCGGCTCCCCAGTCTCCTCCGGAGCCTACCGTCACGGTTACACCGCCGTCACCACCACCACCACCACCACCTGCCCCAACAACCAATAAAGTCTCCGCTTCTGCCTCTGACTCGGCCATTAATTCGAAGCCCAAACTCCGCCCCTCCGTCTCCGATCCCACTCCTCGCTCACCGAAAACCGTCTCTGGCAGTGACGAGGATGACGGAACTCCCAATTCTAAGAGGCTTGCGAGGATAAAGAACCGGGTAAGAGAGATGAGCCTGTGGTTCCAACAAGTCATGGAAGTCGAAGATCATGATGACGGCGACGAAGAACAACACCATCAAGAACAAGATGAAAATGGAGGCACGTCACCAGCTGATCAGGATGCTAATCAGAACACTAACTCTGTTAGCGCTGCTGAGGATGATTGCGAGAGAAAATTTGAAGAATCAGTGAGGATGGAGAGGTTGGAAGAGTGCCAAGTCATTCGCTTCAGGTGCGGCTGCGGCGTTCCTTATGACTTCCTCCTTGCCGGAGACAACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

30.24

Weight (kDa)

5.14

Isoelectric Point (pI)

69.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	298
AclWI	GGATC	3 cut(s)	116, 150, 428
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	676
AgsI	TTSAA	5 cut(s)	92, 103, 148, 268, 707
AjiI	CACGTC	1 cut(s)	630
AluBI	AGCT	3 cut(s)	208, 638, 817
AluI	AGCT	3 cut(s)	208, 638, 817
Alw26I	GTCTC	6 cut(s)	44, 297, 376, 433, 466, 792
AlwI	GGATC	3 cut(s)	116, 150, 428
Aor13HI	TCCGGA	1 cut(s)	298
Aor51HI	AGCGCT	1 cut(s)	676
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	243, 677, 765
ApoI	RAATTY	1 cut(s)	701
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	677
AsuC2I	CCSGG	2 cut(s)	79, 524
AsuHPI	GGTGA	5 cut(s)	4, 73, 321, 441, 624
AsuII	TTCGAA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	230, 664, 752
BccI	CCATC	2 cut(s)	609, 715
BceAI	ACGGC	3 cut(s)	69, 310, 598
BciVI	GTATCC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	2 cut(s)	79, 524
BcoDI	GTCTC	6 cut(s)	44, 297, 376, 433, 466, 792
BfoI	RGCGCY	1 cut(s)	678
BfuAI	ACCTGC	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	190
BisI	GCNGC	8 cut(s)	57, 173, 241, 244, 678, 763, 766, 769
BlsI	GCNGC	8 cut(s)	58, 174, 242, 245, 679, 764, 767, 770
Bme1390I	CCNGG	2 cut(s)	79, 524
BmgBI	CACGTC	1 cut(s)	630
BmiI	GGNNCC	4 cut(s)	83, 285, 303, 548
BmrFI	CCNGG	2 cut(s)	79, 524
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	79, 524
BsaBI	GATNNNNATC	1 cut(s)	651
BsaWI	WCCGGW	2 cut(s)	14, 298
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	298
BseGI	GGATG	4 cut(s)	484, 652, 691, 726
BseJI	GATNNNNATC	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	54, 672
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	6 cut(s)	62, 216, 219, 267, 285, 432
BseXI	GCAGC	3 cut(s)	230, 664, 752
BshFI	GGCC	1 cut(s)	395
BsiSI	CCGG	7 cut(s)	15, 78, 176, 281, 299, 523, 795
BsmAI	GTCTC	6 cut(s)	44, 297, 376, 433, 466, 792
BsmBI	CGTCTC	3 cut(s)	44, 433, 466
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	5 cut(s)	121, 155, 433, 571, 640
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	53, 673
BspEI	TCCGGA	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	4 cut(s)	83, 285, 303, 548
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	3 cut(s)	116, 150, 428
BspT104I	TTCGAA	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	175
BssMI	GATC	5 cut(s)	121, 155, 433, 571, 640
Bst4CI	ACNGT	3 cut(s)	310, 316, 460
Bst6I	CTCTTC	4 cut(s)	16, 143, 237, 729
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	40, 498, 681
BstF5I	GGATG	4 cut(s)	484, 652, 691, 726
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	5 cut(s)	124, 158, 436, 574, 643
BstMAI	GTCTC	6 cut(s)	44, 297, 376, 433, 466, 792
BstMBI	GATC	5 cut(s)	121, 155, 433, 571, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 759, 768
BstSCI	CCNGG	2 cut(s)	77, 522
BstV1I	GCAGC	3 cut(s)	230, 664, 752
BstV2I	GAAGAC	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	395
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	4 cut(s)	484, 652, 691, 726
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	48, 475, 720
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	175
CviAII	CATG	3 cut(s)	559, 575, 820
DdeI	CTNAG	3 cut(s)	40, 498, 681
DpnI	GATC	5 cut(s)	123, 157, 435, 573, 642
DpnII	GATC	5 cut(s)	121, 155, 433, 571, 640
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	4 cut(s)	16, 143, 237, 729
EarI	CTCTTC	4 cut(s)	16, 143, 237, 729
EciI	GGCGGA	3 cut(s)	74, 227, 407
Eco24I	GRGCYC	1 cut(s)	84
Eco47III	AGCGCT	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	84
Esp3I	CGTCTC	3 cut(s)	44, 433, 466
FaeI	CATG	3 cut(s)	562, 578, 823
FaiI	YATR	4 cut(s)	560, 576, 780, 821
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	3 cut(s)	558, 574, 819
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	8 cut(s)	57, 173, 241, 244, 678, 763, 766, 769
FokI	GGATG	4 cut(s)	491, 659, 698, 733
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	8 cut(s)	57, 173, 241, 244, 678, 763, 766, 769
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	8 cut(s)	57, 173, 241, 244, 678, 763, 766, 769
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	7 cut(s)	15, 78, 176, 281, 299, 523, 795
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	562, 578, 823
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	4 cut(s)	67, 130, 389, 710
HpaII	CCGG	7 cut(s)	15, 78, 176, 281, 299, 523, 795
HphI	GGTGA	5 cut(s)	4, 73, 321, 441, 624
Hpy188I	TCNGA	5 cut(s)	184, 253, 388, 433, 657
Hpy188III	TCNNGA	4 cut(s)	299, 575, 605, 644
Hpy99I	CGWCG	2 cut(s)	119, 590
HpyAV	CCTTC	2 cut(s)	26, 109
HpyCH4III	ACNGT	3 cut(s)	310, 316, 460
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	2 cut(s)	96, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 759, 768
HpyF3I	CTNAG	3 cut(s)	40, 498, 681
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	3 cut(s)	562, 578, 823
HspAI	GCGC	1 cut(s)	675
Kpn2I	TCCGGA	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	121, 155, 433, 571, 640
LmnI	GCTCC	3 cut(s)	87, 289, 301
Lsp1109I	GCAGC	3 cut(s)	230, 664, 752
LweI	GCATC	1 cut(s)	637
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	5 cut(s)	310, 316, 327, 470, 630
MalI	GATC	5 cut(s)	123, 157, 435, 573, 642
MboI	GATC	5 cut(s)	121, 155, 433, 571, 640
MboII	GAAGA	8 cut(s)	33, 99, 160, 224, 581, 602, 719, 746
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	400, 493, 701
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	3 cut(s)	276, 574, 711
MroI	TCCGGA	1 cut(s)	298
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	2 cut(s)	243, 638
MspI	CCGG	7 cut(s)	15, 78, 176, 281, 299, 523, 795
MspR9I	CCNGG	2 cut(s)	79, 524
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	93, 759, 768
NciI	CCSGG	2 cut(s)	79, 524
NdeII	GATC	5 cut(s)	121, 155, 433, 571, 640
NlaIII	CATG	3 cut(s)	562, 578, 823
NlaIV	GGNNCC	4 cut(s)	83, 285, 303, 548
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	4 cut(s)	310, 327, 470, 630
NspV	TTCGAA	1 cut(s)	404
PagI	TCATGA	1 cut(s)	574
PaqCI	CACCTGC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	67, 130, 710
PkrI	GCNGC	8 cut(s)	58, 174, 242, 245, 679, 764, 767, 770
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PshBI	ATTAAT	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	83, 285, 303, 548
PvuII	CAGCTG	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	8 cut(s)	57, 173, 241, 244, 678, 763, 766, 769
Sau3AI	GATC	5 cut(s)	121, 155, 433, 571, 640
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	79, 524
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	8 cut(s)	101, 210, 352, 632, 640, 731, 761, 819
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	404
Sse9I	AATT	3 cut(s)	400, 493, 701
StyD4I	CCNGG	2 cut(s)	77, 522
TaaI	ACNGT	3 cut(s)	310, 316, 460
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	2 cut(s)	404, 567
TasI	AATT	3 cut(s)	400, 493, 701
TauI	GCSGC	5 cut(s)	59, 175, 243, 765, 771
TfiI	GAWTC	3 cut(s)	67, 130, 710
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	48, 475, 720
TseFI	GTSAC	4 cut(s)	310, 327, 470, 630
TseI	GCWGC	3 cut(s)	243, 677, 765
Tsp45I	GTSAC	4 cut(s)	310, 327, 470, 630
TspDTI	ATGAA	1 cut(s)	630
TspGWI	ACGGA	3 cut(s)	103, 415, 498
TspRI	CASTG	3 cut(s)	48, 475, 720
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.