Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

9348767 .. 9350421

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTGACCACCACCACCTGTGGCTCTGAACCCATCACCATGAAAACGTCGCCGCCGCCCTCCTCCTCCTCAGCTCCAGACCCTTCTTCTCTCCTCGGTTTCGGCTACTCCAAGATCTCCCTCCCTCTCCACCACCCTCAACCCCTTCTCCGCCGCTGCATTTCCGACCCCTACACTCCTCCGGCGCCGCCGAAAACCAACCCATTTCTCTCCGCCGGTCACTCTCCCGATCGCAACCCACCCAAGACTTCCTCCCCGTTCCCGACCCACTTCAACTCCTCCCTCCCGCCTCTCCCTCCGCCGCAGGCGCCGACCCTCCGCCGCTCCGTCTCCGATCTCAACCCCTCTCCGGCCAAGACCTTCTCCCGCTCCTCCAGCTCCAACGAGATGTCCGTCGAGACTGACTCCGACACTCCCAATTCCAAGAGGCTGAAGAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAAGATTTGGAACAGGATGAACAACTTGAAATTGGAGCTGGTCAAGATATTCCTGACATTGATGCCACTCGAGATATTCCCAATGATACTTCTACTGAGGATAGCAGTGAGAAAGAATTTTCAGAATCTGTGAGTGTGGAGAAGAAGGATGACTCTCTGGTCATTCACTTCAGGTGCCACTGTGACAAAGCCTATCAGTTCCTTCTCAATGGAGGTGACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.92

Weight (kDa)

5.55

Isoelectric Point (pI)

72.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
AccB1I	GGYRCC	3 cut(s)	184, 307, 666
AccBSI	CCGCTC	2 cut(s)	324, 369
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	2 cut(s)	452, 646
AcyI	GRCGYC	2 cut(s)	185, 308
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	274, 521
AluBI	AGCT	5 cut(s)	74, 378, 481, 530, 724
AluI	AGCT	5 cut(s)	74, 378, 481, 530, 724
Alw26I	GTCTC	2 cut(s)	334, 392
AlwNI	CAGNNNCTG	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	156, 478
ApoI	RAATTY	1 cut(s)	608
AspLEI	GCGC	2 cut(s)	187, 310
AsuHPI	GGTGA	2 cut(s)	28, 719
AvaI	CYCGRG	1 cut(s)	561
BanI	GGYRCC	3 cut(s)	184, 307, 666
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	143, 490
BccI	CCATC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	334, 392
BfoI	RGCGCY	2 cut(s)	188, 311
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	8 cut(s)	53, 56, 154, 157, 188, 302, 322, 479
BlsI	GCNGC	8 cut(s)	54, 57, 155, 158, 189, 303, 323, 480
BmeT110I	CYCGRG	1 cut(s)	561
BmiI	GGNNCC	3 cut(s)	186, 309, 668
BmsI	GCATC	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	2 cut(s)	60, 358
Bpu10I	CCTNAGC	1 cut(s)	70
BsaHI	GRCGYC	2 cut(s)	185, 308
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	444, 514, 646
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	84, 579
BseRI	GAGGAG	7 cut(s)	52, 55, 58, 83, 168, 268, 361
BseXI	GCAGC	2 cut(s)	143, 490
BsgI	GTGCAG	1 cut(s)	493
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	3 cut(s)	184, 307, 666
BsiEI	CGRYCG	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	3 cut(s)	182, 216, 350
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	334, 392
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	114, 229, 334
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	83, 580
BspLI	GGNNCC	3 cut(s)	186, 309, 668
BspT107I	GGYRCC	3 cut(s)	184, 307, 666
BsrBI	CCGCTC	2 cut(s)	324, 369
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	114, 229, 334
BssNI	GRCGYC	2 cut(s)	185, 308
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	2 cut(s)	185, 308
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	306, 476
BstDEI	CTNAG	2 cut(s)	70, 588
BstF5I	GGATG	3 cut(s)	444, 514, 646
BstH2I	RGCGCY	2 cut(s)	188, 311
BstHHI	GCGC	2 cut(s)	187, 310
BstKTI	GATC	3 cut(s)	117, 232, 337
BstMAI	GTCTC	2 cut(s)	334, 392
BstMBI	GATC	3 cut(s)	114, 229, 334
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 375, 484
BstV1I	GCAGC	2 cut(s)	143, 490
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	3 cut(s)	444, 514, 646
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	604, 670
Cac8I	GCNNGC	2 cut(s)	306, 476
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	2 cut(s)	187, 310
Cfr10I	RCCGGY	1 cut(s)	215
CviAII	CATG	3 cut(s)	40, 484, 727
DdeI	CTNAG	2 cut(s)	70, 588
DinI	GGCGCC	2 cut(s)	186, 309
DpnI	GATC	3 cut(s)	116, 231, 336
DpnII	GATC	3 cut(s)	114, 229, 334
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	4 cut(s)	140, 202, 288, 308
Eco57I	CTGAAG	2 cut(s)	452, 646
Eco88I	CYCGRG	1 cut(s)	561
EgeI	GGCGCC	2 cut(s)	186, 309
EheI	GGCGCC	2 cut(s)	186, 309
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	3 cut(s)	43, 487, 730
FaiI	YATR	3 cut(s)	41, 485, 728
FatI	CATG	3 cut(s)	39, 483, 726
FauI	CCCGC	2 cut(s)	294, 374
Fnu4HI	GCNGC	8 cut(s)	53, 56, 154, 157, 188, 302, 322, 479
FokI	GGATG	3 cut(s)	451, 521, 653
Fsp4HI	GCNGC	8 cut(s)	53, 56, 154, 157, 188, 302, 322, 479
GlaI	GCGC	2 cut(s)	186, 309
GluI	GCNGC	8 cut(s)	53, 56, 154, 157, 188, 302, 322, 479
GsuI	CTGGAG	2 cut(s)	60, 358
HaeII	RGCGCY	2 cut(s)	188, 311
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	3 cut(s)	182, 216, 350
HhaI	GCGC	2 cut(s)	187, 310
Hin1I	GRCGYC	2 cut(s)	185, 308
Hin1II	CATG	3 cut(s)	43, 487, 730
Hin6I	GCGC	2 cut(s)	185, 308
HinP1I	GCGC	2 cut(s)	185, 308
HinfI	GANTC	3 cut(s)	404, 617, 644
HpaII	CCGG	3 cut(s)	182, 216, 350
HphI	GGTGA	2 cut(s)	28, 719
Hpy188I	TCNGA	5 cut(s)	28, 166, 334, 409, 616
Hpy188III	TCNNGA	7 cut(s)	77, 227, 262, 397, 536, 545, 563
Hpy99I	CGWCG	2 cut(s)	52, 398
HpyAV	CCTTC	6 cut(s)	93, 155, 370, 436, 631, 704
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	159, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 375, 484
HpyF3I	CTNAG	2 cut(s)	70, 588
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	185, 308
Hsp92II	CATG	3 cut(s)	43, 487, 730
HspAI	GCGC	2 cut(s)	185, 308
KasI	GGCGCC	2 cut(s)	184, 307
Kzo9I	GATC	3 cut(s)	114, 229, 334
LmnI	GCTCC	5 cut(s)	79, 329, 374, 383, 527
Lsp1109I	GCAGC	2 cut(s)	143, 490
LweI	GCATC	1 cut(s)	544
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	218, 674, 707
MalI	GATC	3 cut(s)	116, 231, 336
MbiI	CCGCTC	2 cut(s)	324, 369
MboI	GATC	3 cut(s)	114, 229, 334
MboII	GAAGA	5 cut(s)	78, 445, 503, 506, 646
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	3 cut(s)	418, 522, 608
Mly113I	GGCGCC	2 cut(s)	185, 308
MlyI	GAGTC	2 cut(s)	398, 638
MmeI	TCCRAC	3 cut(s)	189, 405, 432
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	182, 216, 350
MwoI	GCNNNNNNNGC	3 cut(s)	307, 375, 484
NarI	GGCGCC	2 cut(s)	185, 308
NdeII	GATC	3 cut(s)	114, 229, 334
NlaIII	CATG	3 cut(s)	43, 487, 730
NlaIV	GGNNCC	3 cut(s)	186, 309, 668
NmuCI	GTSAC	3 cut(s)	218, 674, 707
PaeR7I	CTCGAG	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	617
PkrI	GCNGC	8 cut(s)	54, 57, 155, 158, 189, 303, 323, 480
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	2 cut(s)	398, 638
PluTI	GGCGCC	2 cut(s)	188, 311
PpsI	GAGTC	2 cut(s)	398, 638
PspN4I	GGNNCC	3 cut(s)	186, 309, 668
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	8 cut(s)	53, 56, 154, 157, 188, 302, 322, 479
Sau3AI	GATC	3 cut(s)	114, 229, 334
SchI	GAGTC	2 cut(s)	398, 638
SfaNI	GCATC	1 cut(s)	544
SfoI	GGCGCC	2 cut(s)	186, 309
Sfr274I	CTCGAG	1 cut(s)	561
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	3 cut(s)	418, 522, 608
SspDI	GGCGCC	2 cut(s)	184, 307
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	396, 562
TasI	AATT	3 cut(s)	418, 522, 608
TauI	GCSGC	6 cut(s)	55, 58, 156, 190, 304, 324
TfiI	GAWTC	1 cut(s)	617
TscAI	CASTG	2 cut(s)	604, 677
TseFI	GTSAC	3 cut(s)	218, 674, 707
TseI	GCWGC	2 cut(s)	156, 478
Tsp45I	GTSAC	3 cut(s)	218, 674, 707
TspDTI	ATGAA	3 cut(s)	56, 455, 525
TspGWI	ACGGA	2 cut(s)	316, 382
TspRI	CASTG	2 cut(s)	604, 677
XapI	RAATTY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.