Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

80805764 .. 80808344

Gene Structure 2581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGATGAAGTTCAACATTACCGAAGAGTATTCTTTATCAGAGTTTGCTTCTCAATTAGTCTCTCTCAGTTTTGGCACCGACACTCCCATTTCCAAGACGCTGAAAAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTGTTGAGTGAAGAAGATTTGGAACAAGATGAAGAACTTGAAATTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTTCCAATGGTACTTCTACTGAGTTATCAGTTGCTTCTTTCCGGCAGAAGTTGAAGTCCAAAGCCTGCTACATGAACATTGAGATTTTGAATGCAGGCTCAAGAGTGTCCATCCTTGATCTTAACAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATATTGTTGTCCCTGTGGCTTCCAGTTTTGGCCTTGGAGAGGATTATAATTACTTAAGGAGATCAATCAGAGAATTTTTGACAGATCAGGTCATATATGTGATAGACACACAAACAGATCCAAAAGCTCCCTTTCTGCATAAAGTTGTTGACCCTGAAGACATCGTACACAAGGCTGGATTGGCATACCCACACACATCTCACTGCCTTGCATCTGATGGGAAAAACCAGGGCACACTTCGCTTTTTGGTTATGATTTCAGGTACCAACCGCGCCACAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

234

Amino Acids

26.18

Weight (kDa)

5.0

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	165 - 210	4.2e-12	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	677
AccB1I	GGYRCC	2 cut(s)	77, 677
AccII	CGCG	1 cut(s)	687
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	4 cut(s)	253, 373, 582, 679
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	16, 194, 295, 331
AjnI	CCWGG	1 cut(s)	642
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	2 cut(s)	154, 542
AluI	AGCT	2 cut(s)	154, 542
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	488
Asp718I	GGTACC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	650
BaeI	ACNNNNGTAYC	2 cut(s)	355, 388
BanI	GGYRCC	2 cut(s)	77, 677
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	359, 626
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	1 cut(s)	67
BfrI	CTTAAG	1 cut(s)	469
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	79, 679
BmrFI	CCNGG	1 cut(s)	644
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	217, 635
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	579
BpuEI	CTTGAG	3 cut(s)	192, 219, 325
BsaJI	CCNNGG	2 cut(s)	448, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	380, 438
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	2 cut(s)	448, 643
BseGI	GGATG	2 cut(s)	117, 351
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	82, 252
BseNI	ACTGG	2 cut(s)	380, 438
BseSI	GKGCMC	1 cut(s)	650
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	2 cut(s)	77, 677
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	4 cut(s)	358, 476, 499, 532
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	81, 253
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	79, 679
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	2 cut(s)	77, 677
BspTI	CTTAAG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	380, 438
BssECI	CCNNGG	2 cut(s)	448, 643
BssMI	GATC	4 cut(s)	358, 476, 499, 532
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	469
BstC8I	GCNNGC	3 cut(s)	149, 307, 337
BstDEI	CTNAG	2 cut(s)	68, 261
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	117, 351
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	4 cut(s)	361, 479, 502, 535
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	358, 476, 499, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 654
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	650
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	117, 351
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	3 cut(s)	149, 307, 337
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	689
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	252, 372, 581, 678
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	7 cut(s)	154, 305, 339, 434, 447, 542, 590
CviKI_1	RGCY	7 cut(s)	154, 305, 339, 434, 447, 542, 590
CviQI	GTAC	4 cut(s)	252, 372, 581, 678
DdeI	CTNAG	2 cut(s)	68, 261
DpnI	GATC	4 cut(s)	360, 478, 501, 534
DpnII	GATC	4 cut(s)	358, 476, 499, 532
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	591
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	1 cut(s)	316
FaiI	YATR	8 cut(s)	314, 462, 509, 511, 513, 555, 601, 668
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	2 cut(s)	124, 338
Fsp4HI	GCNGC	1 cut(s)	152
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	565, 583
Hpy188I	TCNGA	3 cut(s)	43, 485, 631
Hpy188III	TCNNGA	5 cut(s)	209, 218, 236, 342, 398
Hpy8I	GTNNAC	2 cut(s)	565, 583
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	147, 335, 553, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 654
HpyF3I	CTNAG	2 cut(s)	68, 261
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	687
KpnI	GGTACC	1 cut(s)	681
Kzo9I	GATC	4 cut(s)	358, 476, 499, 532
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	2 cut(s)	217, 635
MaeIII	GTNAC	2 cut(s)	202, 382
MalI	GATC	4 cut(s)	360, 478, 501, 534
MboI	GATC	4 cut(s)	358, 476, 499, 532
MboII	GAAGA	5 cut(s)	38, 176, 179, 197, 584
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	4 cut(s)	56, 195, 463, 488
MnlI	CCTC	2 cut(s)	400, 448
MseI	TTAA	2 cut(s)	363, 470
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	469
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	644
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	2 cut(s)	596, 654
NdeII	GATC	4 cut(s)	358, 476, 499, 532
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	79, 679
PctI	GAATGC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	79, 679
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	4 cut(s)	253, 373, 582, 679
RsaNI	GTAC	4 cut(s)	252, 372, 581, 678
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	2 cut(s)	363, 470
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	4 cut(s)	358, 476, 499, 532
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	4 cut(s)	156, 507, 544, 679
SfaNI	GCATC	2 cut(s)	217, 635
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	4 cut(s)	207, 234, 340, 469
SmoI	CTYRAG	4 cut(s)	207, 234, 340, 469
Sse9I	AATT	4 cut(s)	56, 195, 463, 488
SsiI	CCGC	1 cut(s)	685
SspI	AATATT	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	448
TasI	AATT	4 cut(s)	56, 195, 463, 488
Tru1I	TTAA	2 cut(s)	363, 470
Tru9I	TTAA	2 cut(s)	363, 470
TscAI	CASTG	1 cut(s)	623
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	23, 128, 198, 329
TspRI	CASTG	1 cut(s)	623
Vha464I	CTTAAG	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.