Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

62976709 .. 62977829

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCAGACTCAAACACCCAACCTTCCACCCACCTCGACTTCGCCGTCAACAACCACTTCTCCATGCTCCGCCTCGACTCCTCCTCCAAACCCCATTCCTCCGCCGCCTTGAAACGCCCCTCTCCGCCTCCCTCCCACCAACCCAACCCCAAGAAGGAGAAGCTCTCTCCTCCTCCCCTCTTCCCCGGATTTTCCAAAATTACCCCTCTCCCTCCTCTCCCCAAATCCCACTCGGGTCTTGCCCGAACCCGACCCCGCAACCCGCTCCTCCGCCGCTGCATCTCCGATCCCTTCACCCCTCCTCGCCTTGATTCTCTCTCCGCTCCTCCCGTCCCCGATTCCACTCACTCTCCCGAGAACGAGAACGACGTCGTTCCCAATTCCGCCGTCACTGCCATCACTTCCCCGCCGTCCGTGATCTCCACGCGTCCGCCACCCCGCCCCACGCTCCACCGCACAGTCTCCGACCCCACCTCTTCCCCCGCCTCCAAATCCGCCTCCCGCGCTTCCTCCAGCTCCGGCGACGGCGACGACGATACCCCCAACACTAAGAGGAGGCTTAAGAGGATCAAAGATCGGTTCAGAGAGATGACGCTGTGGTTTGAACAAGTCATGCTTGAAGATGATGATGATGAGGAGGAAAAAGTACCAGAAATTCAACAAGAACAAGAAGAAGAGGAACAGATTATCAGTAGTACTGAACCCACTGATGACCATGTCCAAGGTCTTGAAAACACTGCAGTCACTAAGGAGGATTGTGATCAAAAGAGGTTTGACGAATTGGTGAGTGTGGAGAAGGTTGGGGAGTGCATTGTGATCCATTTCAGCTGCCACTGTGGGGTTCCCTATCAGTTTCTTCTTGCTGGAGGTAACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.93

Weight (kDa)

5.6

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	372
AccBSI	CCGCTC	2 cut(s)	265, 323
AccII	CGCG	2 cut(s)	427, 504
AclWI	GGATC	3 cut(s)	281, 575, 811
AcsI	RAATTY	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	2 cut(s)	648, 697
AfiI	CCNNNNNNNGG	2 cut(s)	154, 838
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	5 cut(s)	112, 605, 620, 659, 731
AluBI	AGCT	4 cut(s)	163, 516, 828, 886
AluI	AGCT	4 cut(s)	163, 516, 828, 886
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	281, 575, 811
Ama87I	CYCGRG	2 cut(s)	232, 353
ApeKI	GCWGC	2 cut(s)	276, 828
ApoI	RAATTY	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	286, 796
AvaI	CYCGRG	2 cut(s)	232, 353
BbvI	GCAGC	2 cut(s)	263, 815
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	4 cut(s)	29, 371, 394, 541
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	466
BfmI	CTRYAG	1 cut(s)	738
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	4 cut(s)	105, 274, 277, 829
BlsI	GCNGC	4 cut(s)	106, 275, 278, 830
BmcAI	AGTACT	1 cut(s)	697
Bme1390I	CCNGG	1 cut(s)	186
BmeT110I	CYCGRG	2 cut(s)	232, 353
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	496, 885
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	184, 721
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 68, 74, 98, 334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 838
Bse8I	GATNNNNATC	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	184, 721
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	154, 838
BseXI	GCAGC	2 cut(s)	263, 815
Bsh1236I	CGCG	2 cut(s)	427, 504
BsiHKCI	CYCGRG	2 cut(s)	232, 353
BsiSI	CCGG	2 cut(s)	186, 519
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	154, 838
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	317
BsoBI	CYCGRG	2 cut(s)	232, 353
Bsp143I	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
BspFNI	CGCG	2 cut(s)	427, 504
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	3 cut(s)	281, 575, 811
BspTI	CTTAAG	1 cut(s)	560
BsrBI	CCGCTC	2 cut(s)	265, 323
BssECI	CCNNGG	2 cut(s)	184, 721
BssMI	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	721
Bst4CI	ACNGT	2 cut(s)	460, 836
Bst6I	CTCTTC	3 cut(s)	185, 481, 669
BstACI	GRCGYC	1 cut(s)	369
BstAFI	CTTAAG	1 cut(s)	560
BstDEI	CTNAG	2 cut(s)	549, 747
BstFNI	CGCG	2 cut(s)	427, 504
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	6 cut(s)	289, 420, 570, 577, 763, 819
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 503
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	738
BstUI	CGCG	2 cut(s)	427, 504
BstV1I	GCAGC	2 cut(s)	263, 815
BtsI	GCAGTG	2 cut(s)	390, 735
BtsIMutI	CAGTG	4 cut(s)	390, 705, 735, 832
CfoI	GCGC	1 cut(s)	506
CseI	GACGC	2 cut(s)	416, 601
Csp6I	GTAC	2 cut(s)	647, 696
CviAII	CATG	4 cut(s)	64, 613, 716, 889
CviJI	RGCY	5 cut(s)	163, 516, 559, 828, 886
CviKI_1	RGCY	5 cut(s)	163, 516, 559, 828, 886
CviQI	GTAC	2 cut(s)	647, 696
DdeI	CTNAG	2 cut(s)	549, 747
DpnI	GATC	6 cut(s)	288, 419, 569, 576, 762, 818
DpnII	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	185, 481, 669
EarI	CTCTTC	3 cut(s)	185, 481, 669
EciI	GGCGGA	7 cut(s)	59, 91, 114, 260, 373, 420, 484
Eco130I	CCWWGG	1 cut(s)	721
Eco88I	CYCGRG	2 cut(s)	232, 353
EcoT14I	CCWWGG	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	4 cut(s)	67, 616, 719, 892
FaiI	YATR	4 cut(s)	65, 614, 717, 890
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	63, 612, 715, 888
FauI	CCCGC	6 cut(s)	263, 270, 414, 446, 490, 509
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	4 cut(s)	105, 274, 277, 829
Fsp4HI	GCNGC	4 cut(s)	105, 274, 277, 829
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	4 cut(s)	105, 274, 277, 829
GsuI	CTGGAG	2 cut(s)	496, 885
HapII	CCGG	2 cut(s)	186, 519
HgaI	GACGC	2 cut(s)	416, 601
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	4 cut(s)	67, 616, 719, 892
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	8, 77, 311, 338
HpaII	CCGG	2 cut(s)	186, 519
HphI	GGTGA	2 cut(s)	286, 796
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	286, 466, 584
Hpy188III	TCNNGA	2 cut(s)	353, 728
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	5 cut(s)	371, 374, 527, 533, 536
HpyAV	CCTTC	4 cut(s)	33, 148, 301, 790
HpyCH4III	ACNGT	2 cut(s)	460, 836
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	279, 740, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 503
HpyF3I	CTNAG	2 cut(s)	549, 747
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	67, 616, 719, 892
HspAI	GCGC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
LmnI	GCTCC	5 cut(s)	72, 270, 328, 453, 521
LpnPI	CCDG	5 cut(s)	199, 526, 532, 663, 849
Lsp1109I	GCAGC	2 cut(s)	263, 815
LweI	GCATC	1 cut(s)	288
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	388, 742, 869
MalI	GATC	6 cut(s)	288, 419, 569, 576, 762, 818
MbiI	CCGCTC	2 cut(s)	265, 323
MboI	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
MboII	GAAGA	6 cut(s)	172, 468, 632, 683, 686, 848
MluCI	AATT	4 cut(s)	198, 379, 654, 779
MluI	ACGCGT	1 cut(s)	425
MlyI	GAGTC	2 cut(s)	2, 71
MmeI	TCCRAC	1 cut(s)	489
MseI	TTAA	1 cut(s)	561
MspA1I	CMGCKG	2 cut(s)	276, 828
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	186, 519
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	427, 504
MwoI	GCNNNNNNNGC	2 cut(s)	392, 503
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
NlaIII	CATG	4 cut(s)	67, 616, 719, 892
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	2 cut(s)	388, 742
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 366, 531
PfeI	GAWTC	2 cut(s)	311, 338
PflFI	GACNNNGTC	1 cut(s)	716
PkrI	GCNGC	4 cut(s)	106, 275, 278, 830
PleI	GAGTC	2 cut(s)	2, 71
PpsI	GAGTC	2 cut(s)	2, 71
PspN4I	GGNNCC	1 cut(s)	843
PstI	CTGCAG	1 cut(s)	742
PsyI	GACNNNGTC	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	828
RsaI	GTAC	2 cut(s)	648, 697
RsaNI	GTAC	2 cut(s)	647, 696
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	105, 274, 277, 829
Sau3AI	GATC	6 cut(s)	286, 417, 567, 574, 760, 816
ScaI	AGTACT	1 cut(s)	697
SchI	GAGTC	2 cut(s)	2, 71
ScrFI	CCNGG	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	738
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	198, 379, 654, 779
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	2 cut(s)	460, 836
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	36, 75
TasI	AATT	4 cut(s)	198, 379, 654, 779
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	2 cut(s)	107, 276
TfiI	GAWTC	2 cut(s)	311, 338
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	4 cut(s)	397, 712, 742, 839
TseFI	GTSAC	2 cut(s)	388, 742
TseI	GCWGC	2 cut(s)	276, 828
Tsp45I	GTSAC	2 cut(s)	388, 742
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	4 cut(s)	397, 712, 742, 839
Tth111I	GACNNNGTC	1 cut(s)	716
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	654
ZraI	GACGTC	1 cut(s)	370
ZrmI	AGTACT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.