Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002328

Physical Location & Seq

Genomic Coordinates Reverse (-)

13006802 .. 13008202

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG070300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTGACCACCACCTCCTGTGGCTCTGAACCCATCACCATGAAAACGTCGCCGCCGCCGCCGTCCTCCTCCTCAGCTCCAGACCCTTCTTCTCTCCTCGGTTTCGGCTACTCCAAGATCTCCCTCCCTCTCCACCACCACCATCCTCAACCCCTTCTCCGCCGCTGCATTTCCGACCCCTACACTCCTCCGGCGCCGCCGCAAACCAACCCATTTCTCTCCGCCGGTCACTCTCCCGATCGCAACCCACCCAAGACTTCCTCCCCGTTCCCGACCCACTTCAACTCCTCCCTCCCGCCTCTCCCTCCGCCGCAGGCGCCGACCCTCCGCCGCTCAGTCTCCGATCTCAACCCCTCTCCGGCCAAGACCTTCTCCCGCTCCTCCAGCTCCAACGAGATGTCCGTCGAGACTGACTCCGGCACCCCCAATTCCAAGAGGCTGAAGAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAAGATTTGGAACAGGATGAAGAACTTGAAATTGGAGCCGGTCAAGATATTCCTGACATTGATGCCATTCGAGATATTCCCAATGATACTTCTACTGAGGATAGCAGTGAGAAAGAATTTTCAGAATCTGTGAGTGTGGAGAAGAAGGATGACTCTCTGGTCATTCACTTCAGGTGCCACTGTGACAAAGCCTATCAGTTCCTTCTCAATGGAGGTGACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.24

Weight (kDa)

5.62

Isoelectric Point (pI)

75.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32235 AT2G32235 AT2G38690
fragaria_vesca	FvH4_4g05130 FvH4_4g33320
malus_domestica	MD04G1182800.v1.1 MD13G1018300.v1.1 MD16G1230200.v1.1
prunus_persica	Prupe.1G051700_v2.0.a1 Prupe.1G335500_v2.0.a1
pyrus_communis	pycom13g19860 pycom16g01500 pycom16g19210
rosa_chinensis	RchiOBHm_Chr4g0396051 RchiOBHm_Chr4g0442521 RchiOBHm_Chr6g0283071
rosa_laevigata	RLG00000006004 RLG00000009576 RLG00000022087 RLG00000026715
rosa_multiflora	Rmu_sc0006325.1_g000008 Rmu_sc0015594.1_g000004 Rmu_ssc0000204.1_g000047
rosa_roxburghii	Rroxscaffold_5G00340860 Rroxscaffold_5G00383290 Rroxscaffold_5G00383350
rosa_rugosa	Rorug02G0266400 Rorug03G0352900 Rorug04G0105700 Rorug04G0341200
rosa_samantha	Rh4AG064900 Rh4AG065800 Rh4BG063800 Rh4CG070300 Rh4CG421900 Rh4DG060600 Rh4DG399900 Rh4DG400500 Rh6AG264200
rosa_wichuraiana	Rw4G005280 Rw4G033990 Rw6G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	659
AccB1I	GGYRCC	4 cut(s)	193, 316, 419, 675
AccBSI	CCGCTC	2 cut(s)	333, 378
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	2 cut(s)	461, 655
AcyI	GRCGYC	2 cut(s)	194, 317
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	283, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	4 cut(s)	77, 387, 490, 733
AluI	AGCT	4 cut(s)	77, 387, 490, 733
Alw26I	GTCTC	2 cut(s)	343, 401
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	165, 487
ApoI	RAATTY	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	196, 319
AsuHPI	GGTGA	2 cut(s)	28, 728
BanI	GGYRCC	4 cut(s)	193, 316, 419, 675
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	152, 499
BccI	CCATC	2 cut(s)	41, 150
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	343, 401
BfoI	RGCGCY	2 cut(s)	197, 320
BglII	AGATCT	1 cut(s)	117
BmiI	GGNNCC	5 cut(s)	195, 318, 421, 538, 677
BmsI	GCATC	1 cut(s)	553
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	2 cut(s)	63, 367
Bpu10I	CCTNAGC	1 cut(s)	73
BsaHI	GRCGYC	2 cut(s)	194, 317
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	2 cut(s)	224, 539
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	4 cut(s)	142, 453, 523, 655
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	3 cut(s)	87, 348, 588
BseRI	GAGGAG	6 cut(s)	58, 61, 86, 177, 277, 370
BseXI	GCAGC	2 cut(s)	152, 499
BsgI	GTGCAG	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	4 cut(s)	193, 316, 419, 675
BsiEI	CGRYCG	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	191, 225, 359, 417, 540
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	343, 401
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	117, 238, 343
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	3 cut(s)	86, 347, 589
BspLI	GGNNCC	5 cut(s)	195, 318, 421, 538, 677
BspT107I	GGYRCC	4 cut(s)	193, 316, 419, 675
BsrBI	CCGCTC	2 cut(s)	333, 378
BsrFI	RCCGGY	2 cut(s)	224, 539
BssAI	RCCGGY	2 cut(s)	224, 539
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	3 cut(s)	117, 238, 343
BssNI	GRCGYC	2 cut(s)	194, 317
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	2 cut(s)	194, 317
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	315, 485
BstDEI	CTNAG	3 cut(s)	73, 334, 597
BstF5I	GGATG	4 cut(s)	142, 453, 523, 655
BstH2I	RGCGCY	2 cut(s)	197, 320
BstHHI	GCGC	2 cut(s)	196, 319
BstKTI	GATC	3 cut(s)	120, 241, 346
BstMAI	GTCTC	2 cut(s)	343, 401
BstMBI	GATC	3 cut(s)	117, 238, 343
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 316, 384, 493
BstV1I	GCAGC	2 cut(s)	152, 499
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	4 cut(s)	142, 453, 523, 655
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	613, 679
Cac8I	GCNNGC	2 cut(s)	315, 485
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	2 cut(s)	196, 319
Cfr10I	RCCGGY	2 cut(s)	224, 539
CviAII	CATG	3 cut(s)	40, 493, 736
DdeI	CTNAG	3 cut(s)	73, 334, 597
DinI	GGCGCC	2 cut(s)	195, 318
DpnI	GATC	3 cut(s)	119, 240, 345
DpnII	GATC	3 cut(s)	117, 238, 343
DrdI	GACNNNNNNGTC	1 cut(s)	659
DseDI	GACNNNNNNGTC	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	4 cut(s)	149, 211, 297, 317
Eco57I	CTGAAG	2 cut(s)	461, 655
EgeI	GGCGCC	2 cut(s)	195, 318
EheI	GGCGCC	2 cut(s)	195, 318
FaeI	CATG	3 cut(s)	43, 496, 739
FaiI	YATR	3 cut(s)	41, 494, 737
FatI	CATG	3 cut(s)	39, 492, 735
FauI	CCCGC	2 cut(s)	303, 383
FokI	GGATG	4 cut(s)	129, 460, 530, 662
GlaI	GCGC	2 cut(s)	195, 318
GsuI	CTGGAG	2 cut(s)	63, 367
HaeII	RGCGCY	2 cut(s)	197, 320
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	5 cut(s)	191, 225, 359, 417, 540
HhaI	GCGC	2 cut(s)	196, 319
Hin1I	GRCGYC	2 cut(s)	194, 317
Hin1II	CATG	3 cut(s)	43, 496, 739
Hin6I	GCGC	2 cut(s)	194, 317
HinP1I	GCGC	2 cut(s)	194, 317
HinfI	GANTC	3 cut(s)	413, 626, 653
HpaII	CCGG	5 cut(s)	191, 225, 359, 417, 540
HphI	GGTGA	2 cut(s)	28, 728
Hpy188I	TCNGA	4 cut(s)	28, 175, 343, 625
Hpy188III	TCNNGA	7 cut(s)	80, 236, 271, 406, 545, 554, 572
Hpy99I	CGWCG	2 cut(s)	52, 407
HpyAV	CCTTC	6 cut(s)	96, 164, 379, 445, 640, 713
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	168, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 316, 384, 493
HpyF3I	CTNAG	3 cut(s)	73, 334, 597
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	194, 317
Hsp92II	CATG	3 cut(s)	43, 496, 739
HspAI	GCGC	2 cut(s)	194, 317
KasI	GGCGCC	2 cut(s)	193, 316
Kzo9I	GATC	3 cut(s)	117, 238, 343
LmnI	GCTCC	4 cut(s)	82, 383, 392, 536
Lsp1109I	GCAGC	2 cut(s)	152, 499
LweI	GCATC	1 cut(s)	553
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	227, 683, 716
MalI	GATC	3 cut(s)	119, 240, 345
MbiI	CCGCTC	2 cut(s)	333, 378
MboI	GATC	3 cut(s)	117, 238, 343
MboII	GAAGA	6 cut(s)	81, 454, 512, 515, 533, 655
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	3 cut(s)	427, 531, 617
Mly113I	GGCGCC	2 cut(s)	194, 317
MlyI	GAGTC	2 cut(s)	407, 647
MmeI	TCCRAC	2 cut(s)	198, 414
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	5 cut(s)	191, 225, 359, 417, 540
MwoI	GCNNNNNNNGC	4 cut(s)	58, 316, 384, 493
NarI	GGCGCC	2 cut(s)	194, 317
NdeII	GATC	3 cut(s)	117, 238, 343
NlaIII	CATG	3 cut(s)	43, 496, 739
NlaIV	GGNNCC	5 cut(s)	195, 318, 421, 538, 677
NmuCI	GTSAC	3 cut(s)	227, 683, 716
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	626
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	2 cut(s)	407, 647
PluTI	GGCGCC	2 cut(s)	197, 320
PpsI	GAGTC	2 cut(s)	407, 647
PspN4I	GGNNCC	5 cut(s)	195, 318, 421, 538, 677
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	117
PvuI	CGATCG	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	117, 238, 343
SchI	GAGTC	2 cut(s)	407, 647
SetI	ASST	9 cut(s)	17, 50, 79, 371, 389, 492, 677, 718, 735
SfaNI	GCATC	1 cut(s)	553
SfoI	GGCGCC	2 cut(s)	195, 318
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	427, 531, 617
SspDI	GGCGCC	2 cut(s)	193, 316
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	405, 571
TasI	AATT	3 cut(s)	427, 531, 617
TauI	GCSGC	8 cut(s)	55, 58, 61, 165, 199, 202, 313, 333
TfiI	GAWTC	1 cut(s)	626
TscAI	CASTG	2 cut(s)	613, 686
TseFI	GTSAC	3 cut(s)	227, 683, 716
TseI	GCWGC	2 cut(s)	165, 487
Tsp45I	GTSAC	3 cut(s)	227, 683, 716
TspDTI	ATGAA	3 cut(s)	56, 464, 534
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	2 cut(s)	613, 686
XapI	RAATTY	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.