Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

3108789 .. 3110094

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGATTCTCAGATCAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCGGACCGTTACATCATGAGGAACGTTAAAGGACCTGTCAGAGAGGGAGATATTCTCACCTTGCTGGAGTCCGAGAGAGAAGCTAGAAGACTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000309 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004515 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006082 GO:0006139 GO:0006163 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0007444 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009888 GO:0009987 GO:0010467 GO:0012505 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019538 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034627 GO:0034628 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035220 GO:0035295 GO:0042175 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0042802 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0048513 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0060429 GO:0065003 GO:0070013 GO:0070566 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0072521 GO:0072524 GO:0072525 GO:0090304 GO:0090407 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990904 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 ko04979 map03010 map03320 map04979

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

64

Amino Acids

7.37

Weight (kDa)

10.83

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	4 - 63	1.9e-30	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	61
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AlwI	GGATC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	100, 128
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	100, 128
BbsI	GAAGAC	1 cut(s)	190
BccI	CCATC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	100, 128
BmgT120I	GGNCC	2 cut(s)	100, 128
BpiI	GAAGAC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BpmI	CTGGAG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	23, 86
BseNI	ACTGG	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	12, 53
BspCNI	CTCAG	2 cut(s)	22, 85
BspHI	TCATGA	1 cut(s)	111
BspPI	GGATC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	12, 53
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	9, 72
BstKTI	GATC	2 cut(s)	15, 56
BstMBI	GATC	2 cut(s)	12, 53
BstV2I	GAAGAC	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	100, 128
CpoI	CGGWCCG	1 cut(s)	100
CspI	CGGWCCG	1 cut(s)	100
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	1 cut(s)	179
CviKI_1	RGCY	1 cut(s)	179
DdeI	CTNAG	2 cut(s)	9, 72
DpnI	GATC	2 cut(s)	14, 55
DpnII	GATC	2 cut(s)	12, 53
Eco47I	GGWCC	2 cut(s)	100, 128
EcoO109I	RGGNCCY	1 cut(s)	128
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FatI	CATG	1 cut(s)	111
FspBI	CTAG	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	182
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	4 cut(s)	5, 70, 95, 164
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	12, 100, 137, 169
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	9, 72
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	12, 53
LpnPI	CCDG	4 cut(s)	36, 59, 144, 146
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	67, 104
MalI	GATC	2 cut(s)	14, 55
MboI	GATC	2 cut(s)	12, 53
MboII	GAAGA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	64, 89, 173
MnlI	CCTC	2 cut(s)	108, 133
MseI	TTAA	1 cut(s)	123
NdeII	GATC	2 cut(s)	12, 53
NlaIII	CATG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	67
PagI	TCATGA	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	5
PleI	GAGTC	3 cut(s)	64, 89, 172
PpsI	GAGTC	3 cut(s)	64, 89, 172
PpuMI	RGGWCCY	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	100, 128
PspPPI	RGGWCCY	1 cut(s)	128
Rsr2I	CGGWCCG	1 cut(s)	100
RsrII	CGGWCCG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	12, 53
Sau96I	GGNCC	2 cut(s)	100, 128
SchI	GAGTC	3 cut(s)	64, 89, 173
SetI	ASST	5 cut(s)	78, 123, 133, 158, 181
SinI	GGWCC	2 cut(s)	100, 128
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	100, 128
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.