Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Forward (+)

16552168 .. 16553155

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1166400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCAGCTATTACCAAATATCATGCTGTTGTGACTCAGGTGAGAGTCAAATTTTTGGATGACCAGAACCGTTTCATCATGAGGAATGTTAAGGGACCAGTGAGAGAGGGGGATATCCTTACCTTGCTCGAGTCCAAGATGGAGGCAAGAAGGTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000309 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0003824 GO:0004515 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006082 GO:0006139 GO:0006163 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0007444 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009888 GO:0009987 GO:0010467 GO:0012505 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019538 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034627 GO:0034628 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035220 GO:0035295 GO:0042175 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0042802 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0048513 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0060429 GO:0065003 GO:0070013 GO:0070566 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0072521 GO:0072524 GO:0072525 GO:0090304 GO:0090407 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990904 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 ko04979 map03010 map03320 map04979

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

54

Amino Acids

6.22

Weight (kDa)

10.5

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	8 - 52	6.3e-21	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	50
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	128
BspACI	CCGC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	105
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	2 cut(s)	23, 79
CviJI	RGCY	1 cut(s)	8
CviKI_1	RGCY	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	2 cut(s)	26, 82
FaiI	YATR	2 cut(s)	24, 80
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	22, 78
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	26, 82
HinfI	GANTC	3 cut(s)	34, 45, 131
HphI	GGTGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	26, 82
LpnPI	CCDG	3 cut(s)	23, 77, 111
Lsp1109I	GCAGC	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	31
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	3 cut(s)	28, 54, 140
MnlI	CCTC	3 cut(s)	75, 100, 136
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	90
NlaIII	CATG	2 cut(s)	26, 82
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	31
PaeR7I	CTCGAG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	28, 53, 139
PpsI	GAGTC	3 cut(s)	28, 53, 139
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	3 cut(s)	28, 54, 140
SetI	ASST	4 cut(s)	10, 42, 125, 155
Sfr274I	CTCGAG	1 cut(s)	128
SgeI	CNNG	9 cut(s)	35, 50, 76, 91, 110, 136, 140, 142, 148
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.