Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

64148948 .. 64149262

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAATCGACTGTGAAGCACGCCCTGGTGGTGAAAGTGATGGGCCGGACCGGATCCAGAGGTCAGGTGACCCAAGTCCGAGTCAAGTTTCTCGACGACCAGAACCGGTTCATCATGAGGAACGTCAAGGGACCGGTCCGGGAGGGCGACATCCTCACCCTGCTCGAGTCCGAGAGAGAAGCAAGAAGGTTGCGAAAGACTGGTTCTTGTAGTGTTTTGGAAATTGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

77

Amino Acids

8.7

Weight (kDa)

10.47

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	4 - 64	9.2e-32	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	48, 61
AgeI	ACCGGT	2 cut(s)	105, 133
AjnI	CCWGG	1 cut(s)	24
AlwI	GGATC	2 cut(s)	48, 61
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	43
AsiGI	ACCGGT	2 cut(s)	105, 133
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	4 cut(s)	43, 48, 131, 136
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	43, 79, 148
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	48, 131, 136
BamHI	GGATCC	1 cut(s)	53
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	26, 140
Bme18I	GGWCC	3 cut(s)	48, 131, 136
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	4 cut(s)	43, 48, 131, 136
BmiI	GGNNCC	2 cut(s)	55, 132
BmrFI	CCNGG	2 cut(s)	26, 140
BoxI	GACNNNNGTC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	3 cut(s)	50, 105, 133
Bse118I	RCCGGY	2 cut(s)	105, 133
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	45
BshTI	ACCGGT	2 cut(s)	105, 133
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	5 cut(s)	46, 51, 106, 134, 139
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	55, 132
BspPI	GGATC	2 cut(s)	48, 61
BsrFI	RCCGGY	2 cut(s)	105, 133
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	2 cut(s)	105, 133
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	24, 138
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	114
Cfr10I	RCCGGY	2 cut(s)	105, 133
Cfr13I	GGNCC	4 cut(s)	43, 48, 131, 136
CpoI	CGGWCCG	2 cut(s)	48, 136
CspAI	ACCGGT	2 cut(s)	105, 133
CspI	CGGWCCG	2 cut(s)	48, 136
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	1 cut(s)	45
CviKI_1	RGCY	1 cut(s)	45
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eco47I	GGWCC	3 cut(s)	48, 131, 136
Eco88I	CYCGRG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 232
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	114
FokI	GGATG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	5 cut(s)	46, 51, 106, 134, 139
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	3 cut(s)	5, 81, 167
HpaII	CCGG	5 cut(s)	46, 51, 106, 134, 139
HphI	GGTGA	3 cut(s)	43, 79, 148
Hpy188I	TCNGA	2 cut(s)	80, 172
Hpy188III	TCNNGA	3 cut(s)	57, 92, 115
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	2 cut(s)	90, 176
MnlI	CCTC	4 cut(s)	53, 111, 136, 164
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	5 cut(s)	46, 51, 106, 134, 139
MspR9I	CCNGG	2 cut(s)	26, 140
MvaI	CCWGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	55, 132
NmuCI	GTSAC	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	164
PagI	TCATGA	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	138
PinAI	ACCGGT	2 cut(s)	105, 133
PleI	GAGTC	2 cut(s)	89, 175
PpsI	GAGTC	2 cut(s)	89, 175
PshAI	GACNNNNGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	55, 132
PspPI	GGNCC	4 cut(s)	43, 48, 131, 136
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	53
Rsr2I	CGGWCCG	2 cut(s)	48, 136
RsrII	CGGWCCG	2 cut(s)	48, 136
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	4 cut(s)	43, 48, 131, 136
SchI	GAGTC	2 cut(s)	90, 176
ScrFI	CCNGG	2 cut(s)	26, 140
SetI	ASST	4 cut(s)	64, 69, 126, 191
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	3 cut(s)	48, 131, 136
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	24, 138
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	8, 93, 165
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	48, 131, 136
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.