Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Forward (+)

27201700 .. 27204041

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTGTCGGCAGATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGGCGTCGGCAGCTATCGGCAGGTGTGTGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGACTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGTCGACAGGTGTCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCATGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGAGGGACCGGTCCATAACCCGAATGTCATGGGCTTGTTGGTAATTCCACATCAAATGCAAAACCCTAATTCTTTTTCTCCTTCATATTTATACGCTCTCTTCCGCTTGGTGTTCTACTACTGCCGCGGCGAGACCTGCTCATTTTCTCTGTCTGTCTTTGGAGCATCGGAGTCGCAGCCTGTTCAGGATCGGAGAATGGAATCCACAGTGAAGCATGCTCTTGTGGTGAAGGTCATGGGCCGGACTGGGTCTAGGGGACAGGTTACTCAAGTGAGAGTCAAGTTTTTGGATGATCAGAATCGGTTCATCATGAGGAATGTCAAGGGACCAGTGAGGGAGGGTGATATCCTTACCTTGCTCGAGTCTGAGAGGGAAGCAAGAAGGTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

220

Amino Acids

23.21

Weight (kDa)

10.28

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	158 - 218	1.3e-30	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	1 cut(s)	393
AciI	CCGC	4 cut(s)	370, 391, 393, 655
AclWI	GGATC	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	48
AgeI	ACCGGT	1 cut(s)	274
AluBI	AGCT	3 cut(s)	57, 89, 133
AluI	AGCT	3 cut(s)	57, 89, 133
Alw21I	GWGCWC	6 cut(s)	148, 179, 190, 221, 242, 263
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	36, 505
ApeKI	GCWGC	4 cut(s)	54, 86, 130, 442
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	569
AspS9I	GGNCC	5 cut(s)	36, 272, 277, 505, 593
AsuHPI	GGTGA	2 cut(s)	505, 620
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	3 cut(s)	272, 277, 593
Bbv12I	GWGCWC	6 cut(s)	148, 179, 190, 221, 242, 263
BbvI	GCAGC	4 cut(s)	66, 98, 142, 454
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	2 cut(s)	126, 519
BisI	GCNGC	6 cut(s)	55, 87, 131, 391, 394, 443
BlsI	GCNGC	6 cut(s)	56, 88, 132, 392, 395, 444
Bme18I	GGWCC	3 cut(s)	272, 277, 593
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	5 cut(s)	36, 272, 277, 505, 593
BmiI	GGNNCC	3 cut(s)	37, 273, 594
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	522
BoxI	GACNNNNGTC	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpuEI	CTTGAG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	39, 391
BsaWI	WCCGGW	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	517, 596
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	39, 391
BseGI	GGATG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	2 cut(s)	517, 596
BseXI	GCAGC	4 cut(s)	66, 98, 142, 454
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	38, 507
BshTI	ACCGGT	1 cut(s)	274
BsiHKAI	GWGCWC	6 cut(s)	148, 179, 190, 221, 242, 263
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	275, 508
BslFI	GGGAC	4 cut(s)	115, 285, 537, 606
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	4 cut(s)	115, 285, 537, 606
BsnI	GGCC	2 cut(s)	38, 507
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	6 cut(s)	148, 179, 190, 221, 242, 263
Bsp143I	GATC	2 cut(s)	454, 559
BspACI	CCGC	4 cut(s)	370, 391, 393, 655
BspANI	GGCC	2 cut(s)	38, 507
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	37, 273, 594
BspPI	GGATC	1 cut(s)	462
BspTNI	GGTCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	517, 596
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	39, 391
BssMI	GATC	2 cut(s)	454, 559
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	46, 483
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	2 cut(s)	457, 562
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	2 cut(s)	454, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 54, 402
BstNSI	RCATGY	2 cut(s)	217, 485
BstPAI	GACNNNNGTC	1 cut(s)	164
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	66, 98, 142, 454
BsuRI	GGCC	2 cut(s)	38, 507
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	480, 603
Cac8I	GCNNGC	2 cut(s)	46, 483
CciI	TCATGA	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	5 cut(s)	36, 272, 277, 505, 593
Cfr42I	CCGCGG	1 cut(s)	394
CseI	GACGC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	5 cut(s)	214, 295, 482, 502, 577
CviJI	RGCY	8 cut(s)	38, 57, 79, 89, 133, 300, 445, 507
CviKI_1	RGCY	8 cut(s)	38, 57, 79, 89, 133, 300, 445, 507
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	2 cut(s)	456, 561
DpnII	GATC	2 cut(s)	454, 559
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	3 cut(s)	272, 277, 593
Eco88I	CYCGRG	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	613
FaeI	CATG	5 cut(s)	217, 298, 485, 505, 580
FaiI	YATR	8 cut(s)	215, 282, 296, 352, 358, 483, 503, 578
FaqI	GGGAC	4 cut(s)	115, 285, 537, 606
FatI	CATG	5 cut(s)	213, 294, 481, 501, 576
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	6 cut(s)	55, 87, 131, 391, 394, 443
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	6 cut(s)	55, 87, 131, 391, 394, 443
FspBI	CTAG	2 cut(s)	126, 519
GluI	GCNGC	6 cut(s)	55, 87, 131, 391, 394, 443
HaeIII	GGCC	2 cut(s)	38, 507
HapII	CCGG	2 cut(s)	275, 508
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	217, 298, 485, 505, 580
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	6 cut(s)	103, 437, 467, 543, 565, 629
HpaII	CCGG	2 cut(s)	275, 508
HphI	GGTGA	2 cut(s)	505, 620
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	436, 459, 564, 634
Hpy188III	TCNNGA	2 cut(s)	452, 577
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	357, 490, 642
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	74, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 54, 402
HpyF3I	CTNAG	1 cut(s)	633
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	217, 298, 485, 505, 580
Ksp22I	TGATCA	1 cut(s)	559
KspI	CCGCGG	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	454, 559
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	4 cut(s)	66, 98, 142, 454
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	2 cut(s)	126, 519
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	2 cut(s)	456, 561
MboI	GATC	2 cut(s)	454, 559
MboII	GAAGA	1 cut(s)	358
MhlI	GDGCHC	6 cut(s)	148, 179, 190, 221, 242, 263
MluCI	AATT	2 cut(s)	309, 334
MlyI	GAGTC	4 cut(s)	97, 446, 552, 638
MnlI	CCTC	6 cut(s)	49, 262, 573, 594, 598, 630
MroXI	GAANNNNTTC	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	2 cut(s)	275, 508
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	17, 54, 402
NdeII	GATC	2 cut(s)	454, 559
NlaIII	CATG	5 cut(s)	217, 298, 485, 505, 580
NlaIV	GGNNCC	3 cut(s)	37, 273, 594
NmeAIII	GCCGAG	9 cut(s)	20, 73, 85, 127, 158, 169, 200, 221, 242
NspI	RCATGY	2 cut(s)	217, 485
PaeI	GCATGC	1 cut(s)	485
PaeR7I	CTCGAG	1 cut(s)	626
PagI	TCATGA	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	2 cut(s)	467, 565
PflFI	GACNNNGTC	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	56, 88, 132, 392, 395, 444
PleI	GAGTC	4 cut(s)	97, 445, 551, 637
PpsI	GAGTC	4 cut(s)	97, 445, 551, 637
PshAI	GACNNNNGTC	1 cut(s)	164
PspN4I	GGNNCC	3 cut(s)	37, 273, 594
PspPI	GGNCC	5 cut(s)	36, 272, 277, 505, 593
PspXI	VCTCGAGB	1 cut(s)	626
PsyI	GACNNNGTC	1 cut(s)	514
SacII	CCGCGG	1 cut(s)	394
SalI	GTCGAC	1 cut(s)	157
SatI	GCNGC	6 cut(s)	55, 87, 131, 391, 394, 443
Sau3AI	GATC	2 cut(s)	454, 559
Sau96I	GGNCC	5 cut(s)	36, 272, 277, 505, 593
SchI	GAGTC	4 cut(s)	97, 446, 552, 638
SduI	GDGCHC	6 cut(s)	148, 179, 190, 221, 242, 263
SfaNI	GCATC	1 cut(s)	440
Sfr274I	CTCGAG	1 cut(s)	626
Sfr303I	CCGCGG	1 cut(s)	394
SgrBI	CCGCGG	1 cut(s)	394
SinI	GGWCC	3 cut(s)	272, 277, 593
SlaI	CTCGAG	1 cut(s)	626
SmlI	CTYRAG	2 cut(s)	534, 626
SmoI	CTYRAG	2 cut(s)	534, 626
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	2 cut(s)	309, 334
SsiI	CCGC	4 cut(s)	370, 391, 393, 655
SspMI	CTAG	2 cut(s)	126, 519
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	158, 627
TasI	AATT	2 cut(s)	309, 334
TauI	GCSGC	2 cut(s)	393, 396
TfiI	GAWTC	2 cut(s)	467, 565
TscAI	CASTG	2 cut(s)	480, 603
TseI	GCWGC	4 cut(s)	54, 86, 130, 442
TspDTI	ATGAA	2 cut(s)	339, 562
TspRI	CASTG	2 cut(s)	480, 603
Tth111I	GACNNNGTC	1 cut(s)	514
VpaK11BI	GGWCC	3 cut(s)	272, 277, 593
XceI	RCATGY	2 cut(s)	217, 485
XhoI	CTCGAG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	126, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.