Prupe.1G545600_v2.0.a1

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001317
Physical Location & Seq
Reverse (-)
44562020 .. 44564690
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G545600.1

Sequence Viewer

Length: 198 bp
ATGGAATCCACGATCAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGGACTGGATCTCGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTGGATGATCAGAATCGTTTCATCATGAGGAATGTCAAGGGACCAGTGAGGGAGGGGGATATCCTTACCTTGCTCGAGTCTGAGAGGGAAGCCAGAAGATTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

66

Amino Acids

7.51

Weight (kDa)

11.16

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 61
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 2 cut(s) 57, 164
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 43, 79
AvaI CYCGRG 2 cut(s) 57, 164
AvaII GGWCC 1 cut(s) 131
BclI TGATCA 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 2 cut(s) 57, 164
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 55, 134
Bse8I GATNNNNATC 1 cut(s) 102
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 102
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 55, 134
BsiHKCI CYCGRG 2 cut(s) 57, 164
BslFI GGGAC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 144
BsoBI CYCGRG 2 cut(s) 57, 164
Bsp143I GATC 3 cut(s) 12, 53, 97
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 55, 134
BssMI GATC 3 cut(s) 12, 53, 97
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 15, 56, 100
BstMBI GATC 3 cut(s) 12, 53, 97
BstNSI RCATGY 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 2 cut(s) 20, 115
CviJI RGCY 1 cut(s) 182
CviKI_1 RGCY 1 cut(s) 182
DdeI CTNAG 1 cut(s) 171
DpnI GATC 3 cut(s) 14, 55, 99
DpnII GATC 3 cut(s) 12, 53, 97
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 2 cut(s) 57, 164
EcoRV GATATC 1 cut(s) 151
FaeI CATG 2 cut(s) 23, 118
FaiI YATR 3 cut(s) 21, 41, 116
FaqI GGGAC 1 cut(s) 144
FatI CATG 2 cut(s) 19, 114
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 107
Hin1II CATG 2 cut(s) 23, 118
HinfI GANTC 5 cut(s) 5, 70, 81, 103, 167
HphI GGTGA 2 cut(s) 43, 79
Hpy188I TCNGA 3 cut(s) 48, 102, 172
Hpy188III TCNNGA 3 cut(s) 57, 92, 115
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 23, 118
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 12, 53, 97
LpnPI CCDG 4 cut(s) 36, 50, 77, 147
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 14, 55, 99
MboI GATC 3 cut(s) 12, 53, 97
MboII GAAGA 1 cut(s) 198
MflI RGATCY 1 cut(s) 53
MlyI GAGTC 3 cut(s) 64, 90, 176
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 5 cut(s) 53, 111, 132, 136, 168
MroXI GAANNNNTTC 1 cut(s) 107
NdeII GATC 3 cut(s) 12, 53, 97
NlaIII CATG 2 cut(s) 23, 118
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PaeR7I CTCGAG 2 cut(s) 57, 164
PagI TCATGA 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 5, 103
PleI GAGTC 3 cut(s) 64, 89, 175
PpsI GAGTC 3 cut(s) 64, 89, 175
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
PspXI VCTCGAGB 1 cut(s) 164
PsuI RGATCY 1 cut(s) 53
Sau3AI GATC 3 cut(s) 12, 53, 97
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 3 cut(s) 64, 90, 176
SetI ASST 2 cut(s) 69, 161
Sfr274I CTCGAG 2 cut(s) 57, 164
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 2 cut(s) 57, 164
SmlI CTYRAG 3 cut(s) 57, 72, 164
SmoI CTYRAG 3 cut(s) 57, 72, 164
SphI GCATGC 1 cut(s) 23
TaqI TCGA 2 cut(s) 58, 165
TfiI GAWTC 2 cut(s) 5, 103
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 100
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 131
XceI RCATGY 1 cut(s) 23
XhoI CTCGAG 2 cut(s) 57, 164
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.