Rmu_sc0002451.1_g000065

40s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002451.1
OG0001317
Physical Location & Seq
Forward (+)
256014 .. 257955
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002451.1_g000065.1.cds

Sequence Viewer

Length: 558 bp
atgccagctggaagccaaatcattaaccaacaaacacattgccatgctacatcatcacgtaacagtcaacataggtcaaggcatgcattccacgtgattaagcagaagctgaaggagctgagagctgaaggagctgaagtacgagctgaacacctagtcaagccgcctccaacatccaacctccaagccaagccgcctcctcctcctccagaccctcgtctcgagctcccaaatctgagcatggaatcgaatgtgaagcacaccctggtgaaccggttcatcatgagaaacgtcaagggtcttgtccgggagggcaacatcctcaccctgctagagtccgatagagaagcaagaaggcaaccgatctccggtctccgagctccgcctccagcctttcaagcccaaccggccaccgccgaactcggggttggagacttggagcacttccgagtccagaacacagaacacagcgagcaacctgcaaggctgcaaccagcaacccctctccgtcttcttctcctcctcggcttctccagtactcctcttcttctcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

10.32

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 487
AciI CCGC 4 cut(s) 164, 194, 383, 414
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 3 cut(s) 131, 147, 156
AcvI CACGTG 1 cut(s) 94
AfaI GTAC 2 cut(s) 141, 538
AfiI CCNNNNNNNGG 2 cut(s) 368, 423
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 398
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 8 cut(s) 8, 109, 118, 125, 134, 146, 226, 380
AluI AGCT 8 cut(s) 8, 109, 118, 125, 134, 146, 226, 380
Alw21I GWGCWC 3 cut(s) 228, 382, 444
Alw26I GTCTC 3 cut(s) 224, 377, 426
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 2 cut(s) 221, 422
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 487
AsiGI ACCGGT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 280, 316
AvaI CYCGRG 2 cut(s) 221, 422
BanII GRGCYC 2 cut(s) 228, 382
BbrPI CACGTG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 3 cut(s) 228, 382, 444
BbvI GCAGC 1 cut(s) 474
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 3 cut(s) 224, 377, 426
BfaI CTAG 2 cut(s) 155, 332
BfuAI ACCTGC 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 3 cut(s) 164, 194, 488
BlsI GCNGC 3 cut(s) 165, 195, 489
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 2 cut(s) 266, 308
BmeT110I CYCGRG 2 cut(s) 221, 422
BmrFI CCNGG 2 cut(s) 266, 308
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 3 cut(s) 192, 372, 517
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 2 cut(s) 59, 94
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 264, 523
BsaWI WCCGGW 2 cut(s) 273, 368
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 423
Bse118I RCCGGY 2 cut(s) 273, 406
Bse1I ACTGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 264, 523
BseGI GGATG 2 cut(s) 173, 318
BseLI CCNNNNNNNGG 2 cut(s) 368, 423
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 110, 227
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 6 cut(s) 189, 192, 195, 509, 512, 531
BseXI GCAGC 1 cut(s) 474
BshFI GGCC 1 cut(s) 410
BshTI ACCGGT 1 cut(s) 273
BsiHKAI GWGCWC 3 cut(s) 228, 382, 444
BsiHKCI CYCGRG 2 cut(s) 221, 422
BsiSI CCGG 4 cut(s) 274, 307, 369, 407
BslI CCNNNNNNNGG 2 cut(s) 368, 423
BsmAI GTCTC 3 cut(s) 224, 377, 426
BsmBI CGTCTC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 410
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 2 cut(s) 221, 422
Bsp1286I GDGCHC 3 cut(s) 228, 382, 444
Bsp143I GATC 1 cut(s) 363
BspACI CCGC 4 cut(s) 164, 194, 383, 414
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 111, 228
BspHI TCATGA 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 2 cut(s) 273, 406
BsrI ACTGG 1 cut(s) 534
BssAI RCCGGY 2 cut(s) 273, 406
BssECI CCNNGG 2 cut(s) 264, 523
BssMI GATC 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 549
BstBAI YACGTR 2 cut(s) 59, 94
BstC8I GCNNGC 3 cut(s) 6, 84, 473
BstDEI CTNAG 2 cut(s) 119, 236
BstF5I GGATG 2 cut(s) 173, 318
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 3 cut(s) 224, 377, 426
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 4 cut(s) 115, 131, 398, 407
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 86
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 264, 306
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 503
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 173, 318
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 6, 84, 473
CaiI CAGNNNCTG 1 cut(s) 109
CciI TCATGA 1 cut(s) 282
Cfr10I RCCGGY 2 cut(s) 273, 406
Csp6I GTAC 2 cut(s) 140, 537
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 4 cut(s) 44, 83, 241, 283
CviQI GTAC 2 cut(s) 140, 537
DdeI CTNAG 2 cut(s) 119, 236
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 372
Ecl136II GAGCTC 2 cut(s) 226, 380
Eco24I GRGCYC 2 cut(s) 228, 382
Eco31I GGTCTC 1 cut(s) 377
Eco53kI GAGCTC 2 cut(s) 226, 380
Eco57I CTGAAG 3 cut(s) 131, 147, 156
Eco72I CACGTG 1 cut(s) 94
Eco88I CYCGRG 2 cut(s) 221, 422
EcoICRI GAGCTC 2 cut(s) 226, 380
EcoRII CCWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 88
EcoT38I GRGCYC 2 cut(s) 228, 382
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 4 cut(s) 47, 86, 244, 286
FaiI YATR 5 cut(s) 45, 72, 84, 242, 284
FatI CATG 4 cut(s) 43, 82, 240, 282
Fnu4HI GCNGC 3 cut(s) 164, 194, 488
FokI GGATG 2 cut(s) 160, 305
FriOI GRGCYC 2 cut(s) 228, 382
Fsp4HI GCNGC 3 cut(s) 164, 194, 488
FspBI CTAG 2 cut(s) 155, 332
GluI GCNGC 3 cut(s) 164, 194, 488
GsuI CTGGAG 3 cut(s) 192, 372, 517
HaeIII GGCC 1 cut(s) 410
HapII CCGG 4 cut(s) 274, 307, 369, 407
Hin1II CATG 4 cut(s) 47, 86, 244, 286
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HinfI GANTC 3 cut(s) 245, 335, 450
HpaII CCGG 4 cut(s) 274, 307, 369, 407
HphI GGTGA 2 cut(s) 280, 316
Hpy166II GTNNAC 2 cut(s) 68, 271
Hpy188I TCNGA 4 cut(s) 237, 340, 377, 449
Hpy188III TCNNGA 4 cut(s) 209, 221, 283, 454
Hpy8I GTNNAC 2 cut(s) 68, 271
HpyAV CCTTC 3 cut(s) 106, 122, 348
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 3 cut(s) 58, 93, 291
HpyCH4V TGCA 3 cut(s) 86, 482, 490
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 131, 398, 407
HpyF3I CTNAG 2 cut(s) 119, 236
HpySE526I ACGT 3 cut(s) 58, 93, 291
Hsp92II CATG 4 cut(s) 47, 86, 244, 286
Kzo9I GATC 1 cut(s) 363
LmnI GCTCC 5 cut(s) 115, 131, 231, 385, 439
Lsp1109I GCAGC 1 cut(s) 474
MaeI CTAG 2 cut(s) 155, 332
MaeII ACGT 3 cut(s) 58, 93, 291
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 5 cut(s) 503, 506, 536, 539, 544
MhlI GDGCHC 3 cut(s) 228, 382, 444
MlyI GAGTC 2 cut(s) 344, 459
MmeI TCCRAC 3 cut(s) 194, 201, 409
Mph1103I ATGCAT 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 2 cut(s) 24, 99
MslI CAYNNNNRTG 2 cut(s) 42, 266
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 4 cut(s) 274, 307, 369, 407
MspR9I CCNGG 2 cut(s) 266, 308
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 115, 131, 398, 407
NciI CCSGG 1 cut(s) 308
NdeII GATC 1 cut(s) 363
NlaIII CATG 4 cut(s) 47, 86, 244, 286
NmeAIII GCCGAG 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 86
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 1 cut(s) 282
PctI GAATGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 3 cut(s) 165, 195, 489
PleI GAGTC 2 cut(s) 343, 458
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
PpsI GAGTC 2 cut(s) 343, 458
Ppu21I YACGTR 2 cut(s) 59, 94
PshAI GACNNNNGTC 1 cut(s) 216
Psp124BI GAGCTC 2 cut(s) 228, 382
Psp6I CCWGG 1 cut(s) 264
PspCI CACGTG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 2 cut(s) 141, 538
RsaNI GTAC 2 cut(s) 140, 537
RseI CAYNNNNRTG 2 cut(s) 42, 266
SacI GAGCTC 2 cut(s) 228, 382
SaqAI TTAA 2 cut(s) 24, 99
SatI GCNGC 3 cut(s) 164, 194, 488
Sau3AI GATC 1 cut(s) 363
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 2 cut(s) 344, 459
ScrFI CCNGG 2 cut(s) 266, 308
SduI GDGCHC 3 cut(s) 228, 382, 444
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 42, 266
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SphI GCATGC 1 cut(s) 86
SsiI CCGC 4 cut(s) 164, 194, 383, 414
SspMI CTAG 2 cut(s) 155, 332
SstI GAGCTC 2 cut(s) 228, 382
StyD4I CCNGG 2 cut(s) 264, 306
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 3 cut(s) 61, 96, 294
TaqI TCGA 2 cut(s) 222, 248
TatI WGTACW 1 cut(s) 536
TauI GCSGC 2 cut(s) 166, 196
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 24, 99
Tru9I TTAA 2 cut(s) 24, 99
TseI GCWGC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 497
XceI RCATGY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 155, 332
ZrmI AGTACT 1 cut(s) 538
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.