Rroxscaffold_159G00432590

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0001317
Physical Location & Seq
Reverse (-)
10122 .. 10319
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432590.1

Sequence Viewer

Length: 198 bp
ATGGAATCCTCAGTGAAGCATGCTGTTGTCGTGAAAGTTATGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTTAAAGTCAAGTTTCTGGATGATCAGAACAGGCATATCATGAGGAATGTCAAAGGACCAGTGAGGGAGGGAGATATTCTTACCTTGCTTGAGTCTGAAAGGGAAGCGAGGAGGTTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

65

Amino Acids

7.44

Weight (kDa)

10.86

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 4 - 64 7.3e-32 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AclWI GGATC 2 cut(s) 48, 61
AfiI CCNNNNNNNGG 1 cut(s) 64
AlwI GGATC 2 cut(s) 48, 61
Ama87I CYCGRG 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 53
BcgI CGANNNNNNTGC 1 cut(s) 172
BclI TGATCA 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 55, 134
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 24, 86
BseNI ACTGG 2 cut(s) 55, 134
BsiHKCI CYCGRG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 2 cut(s) 53, 97
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 23, 85
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 48, 61
BsrI ACTGG 2 cut(s) 55, 134
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 53, 97
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 10, 72
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 56, 100
BstMBI GATC 2 cut(s) 53, 97
BstNSI RCATGY 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 18, 141
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 2 cut(s) 20, 115
DdeI CTNAG 2 cut(s) 10, 72
DpnI GATC 2 cut(s) 55, 99
DpnII GATC 2 cut(s) 53, 97
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 57
FaeI CATG 2 cut(s) 23, 118
FaiI YATR 4 cut(s) 21, 41, 111, 116
FatI CATG 2 cut(s) 19, 114
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 107
Hin1II CATG 2 cut(s) 23, 118
HinfI GANTC 3 cut(s) 5, 70, 167
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 48, 102, 172
Hpy188III TCNNGA 4 cut(s) 31, 57, 92, 115
HpyF3I CTNAG 2 cut(s) 10, 72
Hsp92II CATG 2 cut(s) 23, 118
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 53, 97
LpnPI CCDG 6 cut(s) 36, 50, 59, 77, 91, 147
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 55, 99
MboI GATC 2 cut(s) 53, 97
MflI RGATCY 1 cut(s) 53
MlyI GAGTC 2 cut(s) 64, 176
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 7 cut(s) 19, 53, 111, 132, 136, 177, 180
MseI TTAA 1 cut(s) 78
NdeII GATC 2 cut(s) 53, 97
NlaIII CATG 2 cut(s) 23, 118
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 114
PfeI GAWTC 1 cut(s) 5
PleI GAGTC 2 cut(s) 64, 175
PpsI GAGTC 2 cut(s) 64, 175
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 1 cut(s) 53
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 2 cut(s) 53, 97
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 2 cut(s) 64, 176
SetI ASST 4 cut(s) 69, 78, 161, 191
SinI GGWCC 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 23
SsiI CCGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 18, 141
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspRI CASTG 2 cut(s) 18, 141
VpaK11BI GGWCC 1 cut(s) 131
XceI RCATGY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.