Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

172245 .. 172634

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggaatcgactgtgaagcacgccctggtggtgaaggtgatgggccggaccgtatctagaggtcaggtgaccgaagtcggagtcaagtttctcgacaaccagaaccggttcatcatgagaaacgtcaagggtcctgtccaggagggcgacatcctcaccctgctcgagtccgatagagaagcaagaaggcaaccgatctccggtctccgagctccgcctccagcctttcaagccccaccggccaccgctgaactcggggttggagacttggagcacttccgagtccggaacacggaacacagcgagcaacctgcaaggctgcaaccagcaacccctcttcgtcttctccttctcctcggcttctccagtcctcctcttcttctcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

129

Amino Acids

14.27

Weight (kDa)

9.95

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	2 cut(s)	215, 246
AcoI	YGGCCR	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	200, 292
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	24, 138
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	2 cut(s)	214, 276
Alw26I	GTCTC	2 cut(s)	209, 258
Ama87I	CYCGRG	2 cut(s)	164, 254
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	2 cut(s)	43, 240
ApeKI	GCWGC	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AsiGI	ACCGGT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	43, 48, 131
AsuHPI	GGTGA	4 cut(s)	43, 49, 79, 148
AvaI	CYCGRG	2 cut(s)	164, 254
AvaII	GGWCC	2 cut(s)	48, 131
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	214, 276
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	26, 140
BcoDI	GTCTC	2 cut(s)	209, 258
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	26, 140
Bme18I	GGWCC	2 cut(s)	48, 131
BmeT110I	CYCGRG	2 cut(s)	164, 254
BmgT120I	GGNCC	3 cut(s)	43, 48, 131
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	26, 140
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	2 cut(s)	204, 349
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	24, 355
BsaWI	WCCGGW	3 cut(s)	105, 200, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 292
Bse118I	RCCGGY	2 cut(s)	105, 238
Bse1I	ACTGG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	26, 140
BseDI	CCNNGG	2 cut(s)	24, 355
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	200, 292
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	2 cut(s)	344, 363
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	45, 242
BshTI	ACCGGT	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	214, 276
BsiHKCI	CYCGRG	2 cut(s)	164, 254
BsiSI	CCGG	5 cut(s)	46, 106, 201, 239, 286
BslI	CCNNNNNNNGG	2 cut(s)	200, 292
BsmAI	GTCTC	2 cut(s)	209, 258
BsnI	GGCC	2 cut(s)	45, 242
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	2 cut(s)	164, 254
Bsp1286I	GDGCHC	2 cut(s)	214, 276
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	2 cut(s)	215, 246
BspANI	GGCC	2 cut(s)	45, 242
BspEI	TCCGGA	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	105, 238
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	2 cut(s)	105, 238
BssECI	CCNNGG	2 cut(s)	24, 355
BssMI	GATC	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	26, 140
Bst4CI	ACNGT	2 cut(s)	13, 52
Bst6I	CTCTTC	2 cut(s)	342, 381
BstC8I	GCNNGC	2 cut(s)	21, 305
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	209, 258
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNI	CCWGG	2 cut(s)	26, 140
BstPAI	GACNNNNGTC	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	24, 138
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	45, 242
BtsCI	GGATG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	21, 305
CciI	TCATGA	1 cut(s)	114
Cfr10I	RCCGGY	2 cut(s)	105, 238
Cfr13I	GGNCC	3 cut(s)	43, 48, 131
CpoI	CGGWCCG	1 cut(s)	48
CspAI	ACCGGT	1 cut(s)	105
CspI	CGGWCCG	1 cut(s)	48
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	7 cut(s)	45, 212, 224, 233, 242, 319, 360
CviKI_1	RGCY	7 cut(s)	45, 212, 224, 233, 242, 319, 360
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	342, 381
EarI	CTCTTC	2 cut(s)	342, 381
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	48, 131
Eco53kI	GAGCTC	1 cut(s)	212
Eco88I	CYCGRG	2 cut(s)	164, 254
Eco91I	GGTNACC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	24, 138
EcoT38I	GRGCYC	1 cut(s)	214
FaeI	CATG	1 cut(s)	118
FaiI	YATR	1 cut(s)	116
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	1 cut(s)	320
GsuI	CTGGAG	2 cut(s)	204, 349
HaeIII	GGCC	2 cut(s)	45, 242
HapII	CCGG	5 cut(s)	46, 106, 201, 239, 286
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	4 cut(s)	5, 81, 167, 282
HpaII	CCGG	5 cut(s)	46, 106, 201, 239, 286
HphI	GGTGA	4 cut(s)	43, 49, 79, 148
Hpy188I	TCNGA	5 cut(s)	80, 172, 209, 281, 389
Hpy188III	TCNNGA	4 cut(s)	57, 92, 115, 286
HpyAV	CCTTC	3 cut(s)	28, 180, 359
HpyCH4III	ACNGT	2 cut(s)	13, 52
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	314, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	118
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	217, 271
Lsp1109I	GCAGC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	5 cut(s)	329, 335, 368, 371, 376
MhlI	GDGCHC	2 cut(s)	214, 276
MlyI	GAGTC	3 cut(s)	90, 176, 291
MmeI	TCCRAC	2 cut(s)	58, 241
MnlI	CCTC	8 cut(s)	53, 136, 164, 228, 345, 365, 381, 384
MroI	TCCGGA	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	5 cut(s)	46, 106, 201, 239, 286
MspR9I	CCNGG	2 cut(s)	26, 140
MvaI	CCWGG	2 cut(s)	26, 140
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	164
PagI	TCATGA	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	3 cut(s)	89, 175, 290
PpsI	GAGTC	3 cut(s)	89, 175, 290
PpuMI	RGGWCCY	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	24, 138
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	24, 138
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	43, 48, 131
PspPPI	RGGWCCY	1 cut(s)	131
PspXI	VCTCGAGB	1 cut(s)	164
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	214
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	3 cut(s)	43, 48, 131
SchI	GAGTC	3 cut(s)	90, 176, 291
ScrFI	CCNGG	2 cut(s)	26, 140
SduI	GDGCHC	2 cut(s)	214, 276
SetI	ASST	6 cut(s)	39, 64, 69, 126, 214, 313
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	48, 131
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	2 cut(s)	215, 246
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	24, 138
TaaI	ACNGT	2 cut(s)	13, 52
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	8, 93, 165
TaqII	GACCGA	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	48, 131
XbaI	TCTAGA	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.