FvH4_2g25780

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001317
Physical Location & Seq
Forward (+)
20819721 .. 20820547
827 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25780.t1

Sequence Viewer

Length: 246 bp
ATGTTATCAAATGTACCTACCCCTTCATTCTGGTCGATCGGAGGAAGGATGGATTCCACGGCGAAGCATGCTGTTGTGGTGAAAGTTATGGGTCGGACTGGATCCAGAGGACAGGTGACTCAGGTTAGAGTCAGGTTTCTGGACGATACGAATCGTCTTATCATGAGGAATGTCAAGGGACCAGTGAGGGAGGGGGATACCCTGACCTTGCTCGAGTCTGAAAGGGAAGCCAGGAGGTTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000309 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0003824 GO:0004515 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006082 GO:0006139 GO:0006163 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0007444 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009888 GO:0009987 GO:0010467 GO:0012505 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019538 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034627 GO:0034628 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035220 GO:0035295 GO:0042175 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0042802 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0048513 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0060429 GO:0065003 GO:0070013 GO:0070566 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0072521 GO:0072524 GO:0072525 GO:0090304 GO:0090407 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990904 GO:1990966
KEGG Pathways
Metabolic & Signaling
ko03010 ko03320 ko04979 map03010 map03320 map04979
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

82

Amino Acids

9.14

Weight (kDa)

11.54

Isoelectric Point (pI)

23.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 20 - 80 5.7e-31 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 96, 109
AfaI GTAC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 230
AlwI GGATC 2 cut(s) 96, 109
Ama87I CYCGRG 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 91, 127
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 101
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 190
BfuI GTATCC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 103, 180
BmrFI CCNGG 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 103, 182
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 150
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 103, 182
Bsh1285I CGRYCG 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 2 cut(s) 36, 101
BspCNI CTCAG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 103, 180
BspPI GGATC 2 cut(s) 96, 109
BsrI ACTGG 2 cut(s) 103, 182
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 36, 101
Bst2UI CCWGG 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 2 cut(s) 39, 104
BstMBI GATC 2 cut(s) 36, 101
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuI GTATCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 68, 163
CviJI RGCY 1 cut(s) 230
CviKI_1 RGCY 1 cut(s) 230
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 38, 103
DpnII GATC 2 cut(s) 36, 101
Eco47I GGWCC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 71, 166
FaiI YATR 3 cut(s) 69, 89, 164
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 67, 162
FokI GGATG 1 cut(s) 61
Hin1II CATG 2 cut(s) 71, 166
HinfI GANTC 5 cut(s) 53, 118, 129, 151, 215
HphI GGTGA 2 cut(s) 91, 127
Hpy188I TCNGA 3 cut(s) 41, 96, 220
Hpy188III TCNNGA 3 cut(s) 105, 140, 163
HpyAV CCTTC 2 cut(s) 33, 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 2 cut(s) 71, 166
Kzo9I GATC 2 cut(s) 36, 101
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 38, 103
MboI GATC 2 cut(s) 36, 101
MflI RGATCY 1 cut(s) 101
MlyI GAGTC 3 cut(s) 112, 138, 224
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 6 cut(s) 35, 101, 159, 180, 184, 228
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 36, 101
NlaIII CATG 2 cut(s) 71, 166
NlaIV GGNNCC 2 cut(s) 103, 180
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 71
PaeI GCATGC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 2 cut(s) 53, 151
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 3 cut(s) 112, 137, 223
PpsI GAGTC 3 cut(s) 112, 137, 223
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 103, 180
PspPI GGNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 212
PsuI RGATCY 1 cut(s) 101
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
Sau3AI GATC 2 cut(s) 36, 101
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 3 cut(s) 112, 138, 224
ScrFI CCNGG 1 cut(s) 232
SetI ASST 6 cut(s) 19, 117, 126, 137, 209, 239
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 230
TaqI TCGA 2 cut(s) 35, 213
TfiI GAWTC 2 cut(s) 53, 151
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.