Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Forward (+)

3078882 .. 3080162

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAGGCCTTACATATTTACAAAGAAAAAACAAAACCCGGGGCAGAAGTTAGAATAACAGAAATACCAGGCCCCGATTTGCAAGTCAATAAACCACAACCCCCTCACTATATTACAAAACCAAAACCCTACTTGGTTGGCCTCGTCTCCTTCAACCTCCAAGCCAAGCCGCCTCCTCTCCTCCAGACCCTCGTCTCGAATCTCAGCATGGAATCGACTGTGAAGCACGCCCTGGTGGTGAAGGTGATGGGCCGGACCGGATCCAGAGGTCAGGTGACCCAAGTCCGAGTCAAGTTTCTCGACGACCAGAACCGGTTCATCATGAGGAACGTCAAGGGACCGGTCCGGGAGGGCGACATCCTCACCCTGCTCGAGTCCGAGAGAGAAGCAAGAAGGTTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

134

Amino Acids

15.17

Weight (kDa)

10.23

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	73 - 133	4.5e-31	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	255, 268
AgeI	ACCGGT	2 cut(s)	312, 340
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	67, 231
Alw26I	GTCTC	2 cut(s)	151, 199
AlwI	GGATC	2 cut(s)	255, 268
Ama87I	CYCGRG	2 cut(s)	38, 371
AoxI	GGCC	4 cut(s)	6, 70, 139, 250
AsiGI	ACCGGT	2 cut(s)	312, 340
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	5 cut(s)	71, 250, 255, 338, 343
AsuC2I	CCSGG	3 cut(s)	39, 40, 347
AsuHPI	GGTGA	4 cut(s)	250, 256, 286, 355
AvaI	CYCGRG	2 cut(s)	38, 371
AvaII	GGWCC	3 cut(s)	255, 338, 343
BamHI	GGATCC	1 cut(s)	260
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	69, 233
BcnI	CCSGG	3 cut(s)	39, 40, 347
BcoDI	GTCTC	2 cut(s)	151, 199
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	5 cut(s)	39, 40, 69, 233, 347
Bme18I	GGWCC	3 cut(s)	255, 338, 343
BmeT110I	CYCGRG	2 cut(s)	38, 371
BmgT120I	GGNCC	5 cut(s)	71, 250, 255, 338, 343
BmiI	GGNNCC	3 cut(s)	73, 262, 339
BmrFI	CCNGG	5 cut(s)	39, 40, 69, 233, 347
BoxI	GACNNNNGTC	2 cut(s)	191, 281
BpmI	CTGGAG	1 cut(s)	167
BpuMI	CCSGG	3 cut(s)	39, 40, 347
BsaJI	CCNNGG	3 cut(s)	38, 39, 231
BsaWI	WCCGGW	3 cut(s)	257, 312, 340
Bse118I	RCCGGY	2 cut(s)	312, 340
BseBI	CCWGG	2 cut(s)	69, 233
BseDI	CCNNGG	3 cut(s)	38, 39, 231
BseGI	GGATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	165, 170
BshFI	GGCC	4 cut(s)	8, 72, 141, 252
BshTI	ACCGGT	2 cut(s)	312, 340
BsiHKCI	CYCGRG	2 cut(s)	38, 371
BsiSI	CCGG	6 cut(s)	39, 253, 258, 313, 341, 346
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	151, 199
BsmBI	CGTCTC	2 cut(s)	151, 199
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	4 cut(s)	8, 72, 141, 252
BsoBI	CYCGRG	2 cut(s)	38, 371
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	4 cut(s)	8, 72, 141, 252
BspCNI	CTCAG	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	73, 262, 339
BspPI	GGATC	2 cut(s)	255, 268
BsrFI	RCCGGY	2 cut(s)	312, 340
BssAI	RCCGGY	2 cut(s)	312, 340
BssECI	CCNNGG	3 cut(s)	38, 39, 231
BssMI	GATC	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	69, 233
Bst4CI	ACNGT	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	6, 228
BstDEI	CTNAG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	2 cut(s)	151, 199
BstMBI	GATC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	69, 233
BstPAI	GACNNNNGTC	2 cut(s)	191, 281
BstPI	GGTNACC	1 cut(s)	274
BstSCI	CCNGG	5 cut(s)	37, 38, 67, 231, 345
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	8, 72, 141, 252
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	6, 228
CciI	TCATGA	1 cut(s)	321
Cfr10I	RCCGGY	2 cut(s)	312, 340
Cfr13I	GGNCC	5 cut(s)	71, 250, 255, 338, 343
Cfr9I	CCCGGG	1 cut(s)	38
CpoI	CGGWCCG	2 cut(s)	255, 343
CspAI	ACCGGT	2 cut(s)	312, 340
CspI	CGGWCCG	2 cut(s)	255, 343
CviAII	CATG	2 cut(s)	208, 322
CviJI	RGCY	6 cut(s)	8, 72, 141, 164, 169, 252
CviKI_1	RGCY	6 cut(s)	8, 72, 141, 164, 169, 252
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	255, 338, 343
Eco88I	CYCGRG	2 cut(s)	38, 371
Eco91I	GGTNACC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	67, 231
Esp3I	CGTCTC	2 cut(s)	151, 199
FaeI	CATG	2 cut(s)	211, 325
FaiI	YATR	4 cut(s)	15, 111, 209, 323
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	207, 321
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	4 cut(s)	8, 72, 141, 252
HapII	CCGG	6 cut(s)	39, 253, 258, 313, 341, 346
Hin1II	CATG	2 cut(s)	211, 325
HinfI	GANTC	4 cut(s)	199, 212, 288, 374
HpaII	CCGG	6 cut(s)	39, 253, 258, 313, 341, 346
HphI	GGTGA	4 cut(s)	250, 256, 286, 355
Hpy188I	TCNGA	2 cut(s)	287, 379
Hpy188III	TCNNGA	5 cut(s)	184, 196, 264, 299, 322
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	160, 235, 387
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	4, 82
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	211, 325
Kzo9I	GATC	1 cut(s)	260
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MflI	RGATCY	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	297, 383
MroXI	GAANNNNTTC	1 cut(s)	314
MspI	CCGG	6 cut(s)	39, 253, 258, 313, 341, 346
MspR9I	CCNGG	5 cut(s)	39, 40, 69, 233, 347
MvaI	CCWGG	2 cut(s)	69, 233
NciI	CCSGG	3 cut(s)	39, 40, 347
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	211, 325
NlaIV	GGNNCC	3 cut(s)	73, 262, 339
NmuCI	GTSAC	1 cut(s)	274
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	199, 212
PfoI	TCCNGGA	1 cut(s)	345
PinAI	ACCGGT	2 cut(s)	312, 340
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	2 cut(s)	296, 382
PpsI	GAGTC	2 cut(s)	296, 382
PshAI	GACNNNNGTC	2 cut(s)	191, 281
Psp6I	CCWGG	2 cut(s)	67, 231
PspEI	GGTNACC	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	67, 231
PspN4I	GGNNCC	3 cut(s)	73, 262, 339
PspPI	GGNCC	5 cut(s)	71, 250, 255, 338, 343
PspXI	VCTCGAGB	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	260
Rsr2I	CGGWCCG	2 cut(s)	255, 343
RsrII	CGGWCCG	2 cut(s)	255, 343
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	5 cut(s)	71, 250, 255, 338, 343
SchI	GAGTC	2 cut(s)	297, 383
ScrFI	CCNGG	5 cut(s)	39, 40, 69, 233, 347
SetI	ASST	6 cut(s)	159, 246, 271, 276, 333, 398
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	3 cut(s)	255, 338, 343
SlaI	CTCGAG	1 cut(s)	371
SmaI	CCCGGG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	5 cut(s)	37, 38, 67, 231, 345
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	197, 215, 300, 372
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	199, 212
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	307
TspMI	CCCGGG	1 cut(s)	38
VpaK11BI	GGWCC	3 cut(s)	255, 338, 343
XhoI	CTCGAG	1 cut(s)	371
XmaI	CCCGGG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.