Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

23066937 .. 23068954

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCTGGGCCCTCCAAGGAAATTTCATATTGGTCCCTGTCAAACCCAGCTCATCGGCCTCATCCTAGAGGAACCGGTCCATAACCCGAATGTCATGGGCTTGTTGGTAATTCCACATCAAATGCAAAACCCTAATTCTTTTTCTCCTTCATATTTATACGCTCGCTTCCTCTTGGTGCTCTCCTACTGCCGTGGCCAGACCTGCTCATTTTCTCTCTCTGTCTTTGGAGCATCGGAGTCGCAGCCTCTTCAGGATCGGAGAATGGAATCCACAGTGAAGCATGCTCTTGTGGTGAAGGTCATGGGCCGGACTGGGTCTAGGGGACAGGTTACTCAAGTGAGAGTCAAGTTTTTGGATGATCAGAATCGGTTCATCATGAGGAATGTCAAGGGACCAGTGAGGGAGGGTGATATCCTTACCTTGCTCGAGTCTGAGAGGGAAGCAAGAAGGTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

152

Amino Acids

17.26

Weight (kDa)

10.02

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	91 - 151	6e-31	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	1 cut(s)	454
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	73
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	4 cut(s)	7, 55, 193, 304
ApaI	GGGCCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	6 cut(s)	7, 8, 32, 76, 304, 392
AsuHPI	GGTGA	2 cut(s)	304, 419
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	3 cut(s)	32, 76, 392
BaeGI	GKGCMC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BclI	TGATCA	1 cut(s)	358
BfaI	CTAG	2 cut(s)	65, 318
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme18I	GGWCC	3 cut(s)	32, 76, 392
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	6 cut(s)	7, 8, 32, 76, 304, 392
BmiI	GGNNCC	4 cut(s)	9, 34, 72, 393
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	14, 190
BsaWI	WCCGGW	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	316, 395
Bse8I	GATNNNNATC	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	14, 190
BseGI	GGATG	2 cut(s)	60, 361
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	316, 395
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	2 cut(s)	4, 45
BshFI	GGCC	4 cut(s)	9, 57, 195, 306
BshTI	ACCGGT	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	74, 307
BslFI	GGGAC	3 cut(s)	18, 336, 405
BsmFI	GGGAC	3 cut(s)	18, 336, 405
BsnI	GGCC	4 cut(s)	9, 57, 195, 306
BsoBI	CYCGRG	1 cut(s)	425
Bsp120I	GGGCCC	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	11, 180
Bsp143I	GATC	2 cut(s)	253, 358
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	4 cut(s)	9, 57, 195, 306
BspCNI	CTCAG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	4 cut(s)	9, 34, 72, 393
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	316, 395
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	14, 190
BssMI	GATC	2 cut(s)	253, 358
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	163, 282
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	60, 361
BstKTI	GATC	2 cut(s)	256, 361
BstMBI	GATC	2 cut(s)	253, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	9, 57, 195, 306
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	60, 361
BtsIMutI	CAGTG	2 cut(s)	279, 402
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	163, 282
CciI	TCATGA	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	6 cut(s)	7, 8, 32, 76, 304, 392
CspAI	ACCGGT	1 cut(s)	73
CviAII	CATG	4 cut(s)	94, 281, 301, 376
CviJI	RGCY	7 cut(s)	9, 49, 57, 99, 195, 244, 306
CviKI_1	RGCY	7 cut(s)	9, 49, 57, 99, 195, 244, 306
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	255, 360
DpnII	GATC	2 cut(s)	253, 358
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	3 cut(s)	32, 76, 392
Eco57I	CTGAAG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	4 cut(s)	97, 284, 304, 379
FaiI	YATR	8 cut(s)	27, 81, 95, 151, 157, 282, 302, 377
FaqI	GGGAC	3 cut(s)	18, 336, 405
FatI	CATG	4 cut(s)	93, 280, 300, 375
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	2 cut(s)	47, 368
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	2 cut(s)	65, 318
GluI	GCNGC	1 cut(s)	242
GsaI	CCCAGC	2 cut(s)	8, 49
HaeIII	GGCC	4 cut(s)	9, 57, 195, 306
HapII	CCGG	2 cut(s)	74, 307
Hin1II	CATG	4 cut(s)	97, 284, 304, 379
HinfI	GANTC	5 cut(s)	236, 266, 342, 364, 428
HpaII	CCGG	2 cut(s)	74, 307
HphI	GGTGA	2 cut(s)	304, 419
Hpy188I	TCNGA	4 cut(s)	235, 258, 363, 433
Hpy188III	TCNNGA	2 cut(s)	251, 376
HpyAV	CCTTC	3 cut(s)	156, 289, 441
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	97, 284, 304, 379
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	253, 358
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	2 cut(s)	65, 318
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	255, 360
MboI	GATC	2 cut(s)	253, 358
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	11, 180
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	3 cut(s)	20, 108, 133
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	245, 351, 437
MnlI	CCTC	9 cut(s)	21, 61, 68, 179, 255, 372, 393, 397, 429
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	2 cut(s)	74, 307
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	2 cut(s)	253, 358
NlaIII	CATG	4 cut(s)	97, 284, 304, 379
NlaIV	GGNNCC	4 cut(s)	9, 34, 72, 393
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	425
PagI	TCATGA	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	266, 364
PflFI	GACNNNGTC	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	3 cut(s)	244, 350, 436
PpsI	GAGTC	3 cut(s)	244, 350, 436
PspFI	CCCAGC	2 cut(s)	4, 45
PspN4I	GGNNCC	4 cut(s)	9, 34, 72, 393
PspOMI	GGGCCC	1 cut(s)	7
PspPI	GGNCC	6 cut(s)	7, 8, 32, 76, 304, 392
PspXI	VCTCGAGB	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	313
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	253, 358
Sau96I	GGNCC	6 cut(s)	7, 8, 32, 76, 304, 392
SchI	GAGTC	3 cut(s)	245, 351, 437
SduI	GDGCHC	2 cut(s)	11, 180
SetI	ASST	6 cut(s)	51, 203, 300, 330, 422, 452
SfaNI	GCATC	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	425
SinI	GGWCC	3 cut(s)	32, 76, 392
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	333, 425
SmoI	CTYRAG	2 cut(s)	333, 425
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	3 cut(s)	20, 108, 133
SsiI	CCGC	1 cut(s)	454
SspMI	CTAG	2 cut(s)	65, 318
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	426
TasI	AATT	3 cut(s)	20, 108, 133
TfiI	GAWTC	2 cut(s)	266, 364
TscAI	CASTG	2 cut(s)	279, 402
TseI	GCWGC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	14, 138, 361
TspRI	CASTG	2 cut(s)	279, 402
Tth111I	GACNNNGTC	1 cut(s)	313
VpaK11BI	GGWCC	3 cut(s)	32, 76, 392
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	65, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.