Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019065.1

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1201

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgctgggccctccaaggaaatttcatattggtccctgtcatacccagctcatcggcctcatcctagaggaaccggtccataacccgaatgtcatgggcttgttggtaattccacatcaaatgcaaaaccctaattctttttctccttcatatttatacgctcgcttcctcttggtgctctcctactgccgcggccagacctgctcattttctctctctgtctttggagcatcggagtcgcagcctcttcaggatcggagaatggaatccacagtgaagcatgctcttgtggtgaaggtcatgggccggactgggtctagggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

108

Amino Acids

12.01

Weight (kDa)

9.57

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	190, 192
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	73
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	4 cut(s)	7, 55, 193, 304
ApaI	GGGCCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	73
AspS9I	GGNCC	5 cut(s)	7, 8, 32, 76, 304
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	32, 76
BaeGI	GKGCMC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BfaI	CTAG	2 cut(s)	65, 318
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	190, 193, 242
BlsI	GCNGC	3 cut(s)	191, 194, 243
Bme18I	GGWCC	2 cut(s)	32, 76
BmgT120I	GGNCC	5 cut(s)	7, 8, 32, 76, 304
BmiI	GGNNCC	3 cut(s)	9, 34, 72
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	14, 190
BsaWI	WCCGGW	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	14, 190
BseGI	GGATG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	2 cut(s)	4, 45
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	9, 57, 195, 306
BshTI	ACCGGT	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	74, 307
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	9, 57, 195, 306
Bsp120I	GGGCCC	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	11, 180
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	190, 192
BspANI	GGCC	4 cut(s)	9, 57, 195, 306
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	9, 34, 72
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	14, 190
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	163, 282
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	9, 57, 195, 306
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	163, 282
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	5 cut(s)	7, 8, 32, 76, 304
Cfr42I	CCGCGG	1 cut(s)	193
CspAI	ACCGGT	1 cut(s)	73
CviAII	CATG	3 cut(s)	94, 281, 301
CviJI	RGCY	7 cut(s)	9, 49, 57, 99, 195, 244, 306
CviKI_1	RGCY	7 cut(s)	9, 49, 57, 99, 195, 244, 306
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	32, 76
Eco57I	CTGAAG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	97, 284, 304
FaiI	YATR	8 cut(s)	27, 42, 81, 95, 151, 157, 282, 302
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	93, 280, 300
Fnu4HI	GCNGC	3 cut(s)	190, 193, 242
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	3 cut(s)	190, 193, 242
FspBI	CTAG	2 cut(s)	65, 318
GluI	GCNGC	3 cut(s)	190, 193, 242
GsaI	CCCAGC	2 cut(s)	8, 49
HaeIII	GGCC	4 cut(s)	9, 57, 195, 306
HapII	CCGG	2 cut(s)	74, 307
Hin1II	CATG	3 cut(s)	97, 284, 304
HinfI	GANTC	2 cut(s)	236, 266
HpaII	CCGG	2 cut(s)	74, 307
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	235, 258
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	156, 289
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	97, 284, 304
KspI	CCGCGG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	8 cut(s)	49, 59, 87, 209, 214, 236, 297, 320
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	2 cut(s)	65, 318
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	11, 180
MluCI	AATT	3 cut(s)	20, 108, 133
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	21, 61, 68, 179, 255
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	2 cut(s)	74, 307
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	97, 284, 304
NlaIV	GGNNCC	3 cut(s)	9, 34, 72
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	191, 194, 243
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspFI	CCCAGC	2 cut(s)	4, 45
PspN4I	GGNNCC	3 cut(s)	9, 34, 72
PspOMI	GGGCCC	1 cut(s)	7
PspPI	GGNCC	5 cut(s)	7, 8, 32, 76, 304
PsyI	GACNNNGTC	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	193
SatI	GCNGC	3 cut(s)	190, 193, 242
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	5 cut(s)	7, 8, 32, 76, 304
SchI	GAGTC	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	11, 180
SetI	ASST	3 cut(s)	51, 203, 300
SfaNI	GCATC	1 cut(s)	239
Sfr303I	CCGCGG	1 cut(s)	193
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	32, 76
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	3 cut(s)	20, 108, 133
SsiI	CCGC	2 cut(s)	190, 192
SspMI	CTAG	2 cut(s)	65, 318
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	3 cut(s)	20, 108, 133
TauI	GCSGC	2 cut(s)	192, 195
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	14, 138
TspRI	CASTG	1 cut(s)	279
Tth111I	GACNNNGTC	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	32, 76
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	2 cut(s)	65, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.