Rh1AG208100

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001317
Physical Location & Seq
Reverse (-)
39493576 .. 39503090
9515 bp
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UTR
Exon/CDS
Intron
Rh1AG208100.1

Sequence Viewer

Length: 183 bp
ATGAGAAACGTCAAGGGTCATGTCCAGGAGGGCGACACCCTCACCTTGCTCGAGTCCGATAGGGAAGCAAGAAGGCTACGTTGCTGGGTTTTCCTCTTCGTCTTCAACGATGGAAAAGAAAAAAGCTATCCTCGACCTACCTATAGAACCAGACCCGATCTCGATCTCGACCTCAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007444 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010467 GO:0012505 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0030867 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0035220 GO:0035295 GO:0042175 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048513 GO:0048731 GO:0048856 GO:0060429 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko03320 ko04979 map03010 map03320 map04979
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

60

Amino Acids

7.18

Weight (kDa)

6.56

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 1 - 26 9.1e-10 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 94
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 50
Bsp143I GATC 2 cut(s) 157, 163
BssMI GATC 2 cut(s) 157, 163
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 101
BstKTI GATC 2 cut(s) 160, 166
BstMBI GATC 2 cut(s) 157, 163
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 94
CviAII CATG 1 cut(s) 20
CviJI RGCY 2 cut(s) 76, 126
CviKI_1 RGCY 2 cut(s) 76, 126
DpnI GATC 2 cut(s) 159, 165
DpnII GATC 2 cut(s) 157, 163
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 144
FatI CATG 1 cut(s) 19
GsaI CCCAGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 161, 167
HpyAV CCTTC 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 9, 79
HpySE526I ACGT 2 cut(s) 9, 79
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 2 cut(s) 157, 163
LpnPI CCDG 4 cut(s) 11, 38, 70, 163
MaeII ACGT 2 cut(s) 9, 79
MalI GATC 2 cut(s) 159, 165
MboI GATC 2 cut(s) 157, 163
MboII GAAGA 2 cut(s) 88, 94
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 5 cut(s) 22, 50, 104, 141, 182
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
NdeII GATC 2 cut(s) 157, 163
NlaIII CATG 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 174
PfoI TCCNGGA 1 cut(s) 24
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 24
PspXI VCTCGAGB 1 cut(s) 50
Sau3AI GATC 2 cut(s) 157, 163
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 26
SetI ASST 7 cut(s) 12, 47, 82, 128, 139, 143, 174
SfcI CTRYAG 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 2 cut(s) 12, 82
TaqI TCGA 4 cut(s) 51, 133, 162, 168
XhoI CTCGAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.