Rw3G019280

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001317
Physical Location & Seq
Reverse (-)
21861201 .. 21862707
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019280.1

Sequence Viewer

Length: 198 bp
ATGGAATCCACAGTGAAGCATGCTCTTGTGGTGAAGGTCATGGGCCGGACTGGGTCTAGGGGACAGGTTACTCAAGTGAGAGTCAAGTTTTTGGATGATCAGAATCGGTTCATCATGAGGAATGTCAAGGGACCAGTGAGGGAGGGTGATATCCTTACCTTGCTCGAGTCTGAGAGGGAAGCAAGAAGGTTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

65

Amino Acids

7.51

Weight (kDa)

11.16

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 4 - 64 5e-32 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 43, 131
AsuHPI GGTGA 2 cut(s) 43, 158
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 131
BclI TGATCA 1 cut(s) 97
BfaI CTAG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 43, 131
BmiI GGNNCC 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 55, 134
Bse8I GATNNNNATC 1 cut(s) 102
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 102
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 55, 134
BshFI GGCC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 2 cut(s) 75, 144
BsmFI GGGAC 2 cut(s) 75, 144
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 132
BsrI ACTGG 2 cut(s) 55, 134
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 18, 141
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 43, 131
CviAII CATG 3 cut(s) 20, 40, 115
CviJI RGCY 1 cut(s) 45
CviKI_1 RGCY 1 cut(s) 45
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 151
FaeI CATG 3 cut(s) 23, 43, 118
FaiI YATR 3 cut(s) 21, 41, 116
FaqI GGGAC 2 cut(s) 75, 144
FatI CATG 3 cut(s) 19, 39, 114
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 46
Hin1II CATG 3 cut(s) 23, 43, 118
HinfI GANTC 4 cut(s) 5, 81, 103, 167
HpaII CCGG 1 cut(s) 46
HphI GGTGA 2 cut(s) 43, 158
Hpy188I TCNGA 2 cut(s) 102, 172
Hpy188III TCNNGA 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 28, 180
HpyCH4III ACNGT 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 3 cut(s) 23, 43, 118
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 36, 50, 59, 147
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MlyI GAGTC 2 cut(s) 90, 176
MnlI CCTC 4 cut(s) 111, 132, 136, 168
MroXI GAANNNNTTC 1 cut(s) 107
MspI CCGG 1 cut(s) 46
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 23, 43, 118
NlaIV GGNNCC 1 cut(s) 132
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 5, 103
PflFI GACNNNGTC 1 cut(s) 52
PleI GAGTC 2 cut(s) 89, 175
PpsI GAGTC 2 cut(s) 89, 175
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 43, 131
PspXI VCTCGAGB 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 43, 131
SchI GAGTC 2 cut(s) 90, 176
SetI ASST 4 cut(s) 39, 69, 161, 191
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 72, 164
SmoI CTYRAG 2 cut(s) 72, 164
SphI GCATGC 1 cut(s) 23
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 165
TfiI GAWTC 2 cut(s) 5, 103
TscAI CASTG 2 cut(s) 18, 141
TspDTI ATGAA 1 cut(s) 100
TspRI CASTG 2 cut(s) 18, 141
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 131
XceI RCATGY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.