RchiOBHm_Chr6g0294091

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001317
Physical Location & Seq
Forward (+)
56549347 .. 56549544
198 bp
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UTR
Exon/CDS
Intron
PRQ26393

Sequence Viewer

Length: 198 bp
ATGGAATCCTCAGTGAAGTATGCTCTTGTCATGAAAGTTATGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTCAAAGTCAAGTTTATGGACGATCACAATCGGCACATCATGAGGAATGTCAAAGGACCAGTGAGGGAGGGGGATATCCTTACCTTGCTCGAGTCTGAAAGGGAAGCAAGGAGGTTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

65

Amino Acids

7.54

Weight (kDa)

10.55

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 4 - 64 4.2e-32 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 48, 61
AfiI CCNNNNNNNGG 1 cut(s) 64
AlwI GGATC 2 cut(s) 48, 61
Ama87I CYCGRG 2 cut(s) 57, 164
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 57, 164
AvaII GGWCC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 2 cut(s) 57, 164
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 55
BoxI GACNNNNGTC 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 55, 134
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 24, 86
BseNI ACTGG 2 cut(s) 55, 134
BsiHKCI CYCGRG 2 cut(s) 57, 164
BslI CCNNNNNNNGG 1 cut(s) 64
BsoBI CYCGRG 2 cut(s) 57, 164
Bsp143I GATC 2 cut(s) 53, 97
BspCNI CTCAG 2 cut(s) 23, 85
BspHI TCATGA 2 cut(s) 30, 114
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 48, 61
BsrI ACTGG 2 cut(s) 55, 134
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 53, 97
BstDEI CTNAG 2 cut(s) 10, 72
BstKTI GATC 2 cut(s) 56, 100
BstMBI GATC 2 cut(s) 53, 97
BstPAI GACNNNNGTC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 18, 141
CciI TCATGA 2 cut(s) 30, 114
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 2 cut(s) 31, 115
DdeI CTNAG 2 cut(s) 10, 72
DpnI GATC 2 cut(s) 55, 99
DpnII GATC 2 cut(s) 53, 97
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 2 cut(s) 57, 164
EcoRV GATATC 1 cut(s) 151
FaeI CATG 2 cut(s) 34, 118
FaiI YATR 5 cut(s) 21, 32, 41, 92, 116
FatI CATG 2 cut(s) 30, 114
Hin1II CATG 2 cut(s) 34, 118
HinfI GANTC 3 cut(s) 5, 70, 167
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 48, 172
Hpy188III TCNNGA 3 cut(s) 31, 57, 115
HpyF3I CTNAG 2 cut(s) 10, 72
Hsp92II CATG 2 cut(s) 34, 118
Kzo9I GATC 2 cut(s) 53, 97
LpnPI CCDG 4 cut(s) 36, 50, 59, 147
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 55, 99
MboI GATC 2 cut(s) 53, 97
MflI RGATCY 1 cut(s) 53
MlyI GAGTC 2 cut(s) 64, 176
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 6 cut(s) 19, 53, 111, 132, 136, 180
NdeII GATC 2 cut(s) 53, 97
NlaIII CATG 2 cut(s) 34, 118
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 2 cut(s) 30, 114
PfeI GAWTC 1 cut(s) 5
PleI GAGTC 2 cut(s) 64, 175
PpsI GAGTC 2 cut(s) 64, 175
PshAI GACNNNNGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 131
PspXI VCTCGAGB 1 cut(s) 164
PsuI RGATCY 1 cut(s) 53
Sau3AI GATC 2 cut(s) 53, 97
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 2 cut(s) 64, 176
SetI ASST 4 cut(s) 69, 78, 161, 191
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
TaqI TCGA 1 cut(s) 165
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 2 cut(s) 18, 141
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 2 cut(s) 18, 141
VpaK11BI GGWCC 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.