Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

7045035 .. 7051055

Gene Structure 6021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGACTGGTAAAGCCTATAATGCAGAAGCGGCTATTAATTGCATGTCTTCATCTTTGACATGTTTCGTCGATCAGAGGCACCTTTCTTATCCCCAAATTCTCTTTTCAAGTGTAGGATTGATGGAATCCTCAGTGAAGCATGCTGTTGTCGTGAAAGTTATGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTTAAAGTCAAGTTTCTGGACGATCAGAACCGGCATATCATGAGGAATGTCAAAGGACCAGTAAGAGAGGGAGATATTCTTACCTACCTTGCTCGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

98

Amino Acids

10.87

Weight (kDa)

9.75

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	44 - 93	4.2e-23	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	168, 181
AcsI	RAATTY	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	108
AlwI	GGATC	2 cut(s)	168, 181
Ama87I	CYCGRG	2 cut(s)	177, 288
ApoI	RAATTY	1 cut(s)	96
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	2 cut(s)	177, 288
AvaII	GGWCC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	39
BccI	CCATC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	2 cut(s)	177, 288
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	80, 175
BpiI	GAAGAC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	3 cut(s)	10, 175, 254
BseDI	CCNNGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	144, 206
BseNI	ACTGG	3 cut(s)	10, 175, 254
BshNI	GGYRCC	1 cut(s)	78
BsiHKCI	CYCGRG	2 cut(s)	177, 288
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	184
BsoBI	CYCGRG	2 cut(s)	177, 288
Bsp143I	GATC	3 cut(s)	70, 173, 217
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	143, 205
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	80, 175
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	10, 175, 254
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	70, 173, 217
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	130, 192
BstKTI	GATC	3 cut(s)	73, 176, 220
BstMBI	GATC	3 cut(s)	70, 173, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 29
BstNSI	RCATGY	3 cut(s)	46, 63, 143
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	4 cut(s)	43, 60, 140, 235
CviJI	RGCY	2 cut(s)	14, 32
CviKI_1	RGCY	2 cut(s)	14, 32
DdeI	CTNAG	2 cut(s)	130, 192
DpnI	GATC	3 cut(s)	72, 175, 219
DpnII	GATC	3 cut(s)	70, 173, 217
Eco47I	GGWCC	1 cut(s)	251
Eco88I	CYCGRG	2 cut(s)	177, 288
FaeI	CATG	4 cut(s)	46, 63, 143, 238
FaiI	YATR	7 cut(s)	18, 44, 61, 141, 161, 231, 236
FatI	CATG	4 cut(s)	42, 59, 139, 234
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	4 cut(s)	46, 63, 143, 238
HinfI	GANTC	3 cut(s)	125, 190, 291
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	75, 168, 222, 296
Hpy188III	TCNNGA	4 cut(s)	151, 177, 212, 235
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	23, 42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 29
HpyF3I	CTNAG	2 cut(s)	130, 192
Hsp92II	CATG	4 cut(s)	46, 63, 143, 238
Kzo9I	GATC	3 cut(s)	70, 173, 217
LpnPI	CCDG	6 cut(s)	156, 170, 179, 197, 239, 267
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	3 cut(s)	72, 175, 219
MboI	GATC	3 cut(s)	70, 173, 217
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	2 cut(s)	37, 96
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	69, 139, 173, 231, 256
MseI	TTAA	2 cut(s)	36, 198
MspI	CCGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	20, 29
NdeII	GATC	3 cut(s)	70, 173, 217
NlaIII	CATG	4 cut(s)	46, 63, 143, 238
NlaIV	GGNNCC	2 cut(s)	80, 175
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	3 cut(s)	46, 63, 143
PaeI	GCATGC	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	288
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	80, 175
PspPI	GGNCC	1 cut(s)	251
PspXI	VCTCGAGB	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	36, 198
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	70, 173, 217
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	184
SetI	ASST	5 cut(s)	84, 189, 198, 281, 285
Sfr274I	CTCGAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	2 cut(s)	37, 96
SsiI	CCGC	1 cut(s)	29
TaqI	TCGA	2 cut(s)	69, 289
TasI	AATT	2 cut(s)	37, 96
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	36, 198
Tru9I	TTAA	2 cut(s)	36, 198
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	3 cut(s)	46, 63, 143
XhoI	CTCGAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.