Prupe.7G087500_v2.0.a1

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001317
Physical Location & Seq
Forward (+)
12163954 .. 12165392
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G087500.1

Sequence Viewer

Length: 303 bp
AACTTCCTCTCTCTCTCTCTCTCTCTTCTCGCTTCTGTCTGTGCTTCTCTCTCTCTATATTCCCGGCGGCCAGTGTTGCAGTCTCAACCTTTGGACAATCAGAGAATGGATTCCACTATAAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGGACTGGGTCTCGAGGGCAGGTGACTCAAGTGCGAGTCAAGTTTTTGGATGACCAGAATCGGTTCATTATGAGGAATGTCAAGGGGCCAGTGAGGGAGGGGGATATCCTGACCTTGCTCGAGTCTGAGAGGGAAGCAAGACGGTTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

101

Amino Acids

11.35

Weight (kDa)

11.08

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 160
AciI CCGC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 87, 165
Ama87I CYCGRG 2 cut(s) 162, 269
AoxI GGCC 2 cut(s) 68, 236
Asp700I GAANNNNTTC 2 cut(s) 109, 212
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 148, 184
AvaI CYCGRG 2 cut(s) 162, 269
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 87, 165
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 162, 269
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 71, 160, 239
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 3 cut(s) 71, 160, 239
BshFI GGCC 2 cut(s) 70, 238
BsiHKCI CYCGRG 2 cut(s) 162, 269
BsiSI CCGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 87, 165
BsnI GGCC 2 cut(s) 70, 238
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 2 cut(s) 162, 269
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 70, 238
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 165
BsrI ACTGG 3 cut(s) 71, 160, 239
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 87, 165
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 62
BsuRI GGCC 2 cut(s) 70, 238
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 78, 246
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 236
CviAII CATG 1 cut(s) 125
CviJI RGCY 2 cut(s) 70, 238
CviKI_1 RGCY 2 cut(s) 70, 238
DdeI CTNAG 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 165
Eco32I GATATC 1 cut(s) 256
Eco88I CYCGRG 2 cut(s) 162, 269
EcoRV GATATC 1 cut(s) 256
FaeI CATG 1 cut(s) 128
FaiI YATR 5 cut(s) 58, 119, 126, 146, 221
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 2 cut(s) 70, 238
HapII CCGG 1 cut(s) 64
Hin1II CATG 1 cut(s) 128
HinfI GANTC 5 cut(s) 110, 175, 186, 208, 272
HpaII CCGG 1 cut(s) 64
HphI GGTGA 2 cut(s) 148, 184
Hpy188I TCNGA 3 cut(s) 102, 153, 277
Hpy188III TCNNGA 2 cut(s) 162, 259
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 128
LpnPI CCDG 7 cut(s) 77, 84, 141, 155, 218, 252, 272
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 1 cut(s) 17
MlyI GAGTC 3 cut(s) 169, 195, 281
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 6 cut(s) 17, 158, 216, 237, 241, 273
MroXI GAANNNNTTC 2 cut(s) 109, 212
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 64
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PaeR7I CTCGAG 2 cut(s) 162, 269
PaqCI CACCTGC 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 109, 212
PfeI GAWTC 2 cut(s) 110, 208
PflFI GACNNNGTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 3 cut(s) 169, 194, 280
PpsI GAGTC 3 cut(s) 169, 194, 280
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 236
PspXI VCTCGAGB 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 157
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 3 cut(s) 169, 195, 281
ScrFI CCNGG 1 cut(s) 64
SetI ASST 3 cut(s) 91, 174, 266
Sfr274I CTCGAG 2 cut(s) 162, 269
SlaI CTCGAG 2 cut(s) 162, 269
SmlI CTYRAG 3 cut(s) 162, 177, 269
SmoI CTYRAG 3 cut(s) 162, 177, 269
SphI GCATGC 1 cut(s) 128
SsiI CCGC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 163, 270
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 110, 208
TscAI CASTG 2 cut(s) 78, 246
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 2 cut(s) 78, 246
Tth111I GACNNNGTC 1 cut(s) 157
XceI RCATGY 1 cut(s) 128
XhoI CTCGAG 2 cut(s) 162, 269
XmnI GAANNNNTTC 2 cut(s) 109, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.