40S ribosomal protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_S28e | PF01200 | 4 - 64 | 2.5e-31 | Ribosomal protein S28e |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 193 |
| AclWI | GGATC | 2 cut(s) | 48, 61 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AlwI | GGATC | 2 cut(s) | 48, 61 |
| Ama87I | CYCGRG | 2 cut(s) | 57, 164 |
| AspS9I | GGNCC | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 79 |
| AvaI | CYCGRG | 2 cut(s) | 57, 164 |
| AvaII | GGWCC | 1 cut(s) | 131 |
| BamHI | GGATCC | 1 cut(s) | 53 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 172 |
| Bme18I | GGWCC | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 2 cut(s) | 57, 164 |
| BmgT120I | GGNCC | 1 cut(s) | 131 |
| BmiI | GGNNCC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 58 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse118I | RCCGGY | 1 cut(s) | 105 |
| Bse1I | ACTGG | 2 cut(s) | 55, 134 |
| BseDI | CCNNGG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 2 cut(s) | 24, 86 |
| BseNI | ACTGG | 2 cut(s) | 55, 134 |
| BsiHKCI | CYCGRG | 2 cut(s) | 57, 164 |
| BsiSI | CCGG | 1 cut(s) | 106 |
| BslFI | GGGAC | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmFI | GGGAC | 1 cut(s) | 155 |
| BsoBI | CYCGRG | 2 cut(s) | 57, 164 |
| Bsp143I | GATC | 2 cut(s) | 53, 97 |
| BspACI | CCGC | 1 cut(s) | 193 |
| BspCNI | CTCAG | 2 cut(s) | 23, 85 |
| BspHI | TCATGA | 1 cut(s) | 114 |
| BspLI | GGNNCC | 1 cut(s) | 55 |
| BspPI | GGATC | 2 cut(s) | 48, 61 |
| BsrFI | RCCGGY | 1 cut(s) | 105 |
| BsrI | ACTGG | 2 cut(s) | 55, 134 |
| BssAI | RCCGGY | 1 cut(s) | 105 |
| BssECI | CCNNGG | 1 cut(s) | 58 |
| BssMI | GATC | 2 cut(s) | 53, 97 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 2 cut(s) | 10, 72 |
| BstKTI | GATC | 2 cut(s) | 56, 100 |
| BstMBI | GATC | 2 cut(s) | 53, 97 |
| BstNSI | RCATGY | 1 cut(s) | 23 |
| BstX2I | RGATCY | 1 cut(s) | 53 |
| BstYI | RGATCY | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 2 cut(s) | 18, 141 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CciI | TCATGA | 1 cut(s) | 114 |
| Cfr10I | RCCGGY | 1 cut(s) | 105 |
| Cfr13I | GGNCC | 1 cut(s) | 131 |
| CviAII | CATG | 2 cut(s) | 20, 115 |
| DdeI | CTNAG | 2 cut(s) | 10, 72 |
| DpnI | GATC | 2 cut(s) | 55, 99 |
| DpnII | GATC | 2 cut(s) | 53, 97 |
| Eco47I | GGWCC | 1 cut(s) | 131 |
| Eco88I | CYCGRG | 2 cut(s) | 57, 164 |
| FaeI | CATG | 2 cut(s) | 23, 118 |
| FaiI | YATR | 4 cut(s) | 21, 41, 111, 116 |
| FaqI | GGGAC | 1 cut(s) | 155 |
| FatI | CATG | 2 cut(s) | 19, 114 |
| HapII | CCGG | 1 cut(s) | 106 |
| Hin1II | CATG | 2 cut(s) | 23, 118 |
| HinfI | GANTC | 3 cut(s) | 5, 70, 167 |
| HpaII | CCGG | 1 cut(s) | 106 |
| HphI | GGTGA | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 172 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 57, 92, 115 |
| HpyF3I | CTNAG | 2 cut(s) | 10, 72 |
| Hsp92II | CATG | 2 cut(s) | 23, 118 |
| Kzo9I | GATC | 2 cut(s) | 53, 97 |
| LpnPI | CCDG | 6 cut(s) | 36, 50, 59, 77, 119, 147 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 2 cut(s) | 55, 99 |
| MboI | GATC | 2 cut(s) | 53, 97 |
| MflI | RGATCY | 1 cut(s) | 53 |
| MlyI | GAGTC | 2 cut(s) | 64, 176 |
| MmeI | TCCRAC | 1 cut(s) | 26 |
| MnlI | CCTC | 6 cut(s) | 19, 53, 111, 132, 177, 180 |
| MseI | TTAA | 1 cut(s) | 78 |
| MspI | CCGG | 1 cut(s) | 106 |
| NdeII | GATC | 2 cut(s) | 53, 97 |
| NlaIII | CATG | 2 cut(s) | 23, 118 |
| NlaIV | GGNNCC | 1 cut(s) | 55 |
| NmuCI | GTSAC | 1 cut(s) | 67 |
| NspI | RCATGY | 1 cut(s) | 23 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PaeR7I | CTCGAG | 1 cut(s) | 164 |
| PagI | TCATGA | 1 cut(s) | 114 |
| PfeI | GAWTC | 1 cut(s) | 5 |
| PleI | GAGTC | 2 cut(s) | 64, 175 |
| PpsI | GAGTC | 2 cut(s) | 64, 175 |
| PspN4I | GGNNCC | 1 cut(s) | 55 |
| PspPI | GGNCC | 1 cut(s) | 131 |
| PspXI | VCTCGAGB | 1 cut(s) | 164 |
| PsuI | RGATCY | 1 cut(s) | 53 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| Sau3AI | GATC | 2 cut(s) | 53, 97 |
| Sau96I | GGNCC | 1 cut(s) | 131 |
| SchI | GAGTC | 2 cut(s) | 64, 176 |
| SetI | ASST | 4 cut(s) | 69, 78, 161, 191 |
| Sfr274I | CTCGAG | 1 cut(s) | 164 |
| SinI | GGWCC | 1 cut(s) | 131 |
| SlaI | CTCGAG | 1 cut(s) | 164 |
| SmlI | CTYRAG | 1 cut(s) | 164 |
| SmoI | CTYRAG | 1 cut(s) | 164 |
| SphI | GCATGC | 1 cut(s) | 23 |
| SsiI | CCGC | 1 cut(s) | 193 |
| TaqI | TCGA | 1 cut(s) | 165 |
| TfiI | GAWTC | 1 cut(s) | 5 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TscAI | CASTG | 2 cut(s) | 18, 141 |
| TseFI | GTSAC | 1 cut(s) | 67 |
| Tsp45I | GTSAC | 1 cut(s) | 67 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| TspRI | CASTG | 2 cut(s) | 18, 141 |
| VpaK11BI | GGWCC | 1 cut(s) | 131 |
| XceI | RCATGY | 1 cut(s) | 23 |
| XhoI | CTCGAG | 1 cut(s) | 164 |