Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

9856231 .. 9857024

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG060200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGATCGTTCGGTAATTTCATATATGTGTACATATAGTAACCCTACTACGTATGATCACTTCCTCCTTGTTGTTTTGATTCATTCGATCTGCCGCACACAGAAACCTCTCACTTTTGTCGGTGCACTACAGTTTCGTCTATCGGAGATGGAATCCTCAGTGAAGCATGCTGTTGTCGTGAAAGTTATGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTTAAAGTCAAGTTTCTGGACGATCAGAACCGGCATATCATGAGGAATGTCAAAGGACCAGTGAGGGAGGGAGATATTCTTACCTTGCTCGAGTCTGAAAGGGAAGCGAGGAGGTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

114

Amino Acids

13.12

Weight (kDa)

9.93

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	53 - 113	4.4e-31	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	94, 340
AclWI	GGATC	3 cut(s)	12, 195, 208
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	12, 195, 208
Ama87I	CYCGRG	2 cut(s)	204, 311
ApaLI	GTGCAC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	2 cut(s)	204, 311
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	1 cut(s)	142
BcgI	CGANNNNNNTGC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	2 cut(s)	204, 311
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	202, 281
BseDI	CCNNGG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	171, 233
BseNI	ACTGG	2 cut(s)	202, 281
BseSI	GKGCMC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	2 cut(s)	204, 311
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	211
BsoBI	CYCGRG	2 cut(s)	204, 311
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	4, 55, 87, 200, 244
BspACI	CCGC	2 cut(s)	94, 340
BspCNI	CTCAG	2 cut(s)	170, 232
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	12, 195, 208
BsrFI	RCCGGY	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	202, 281
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	5 cut(s)	4, 55, 87, 200, 244
Bst4CI	ACNGT	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	157, 219
BstKTI	GATC	5 cut(s)	7, 58, 90, 203, 247
BstMBI	GATC	5 cut(s)	4, 55, 87, 200, 244
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	127
BstSNI	TACGTA	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	165, 288
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	167, 262
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	157, 219
DpnI	GATC	5 cut(s)	6, 57, 89, 202, 246
DpnII	GATC	5 cut(s)	4, 55, 87, 200, 244
Eco105I	TACGTA	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	204, 311
FaeI	CATG	2 cut(s)	170, 265
FatI	CATG	2 cut(s)	166, 261
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	94
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	2 cut(s)	170, 265
HinfI	GANTC	4 cut(s)	79, 152, 217, 314
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	30, 125
Hpy188I	TCNGA	4 cut(s)	145, 195, 249, 319
Hpy188III	TCNNGA	4 cut(s)	178, 204, 239, 262
Hpy8I	GTNNAC	2 cut(s)	30, 125
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	157, 219
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	170, 265
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	4, 55, 87, 200, 244
LpnPI	CCDG	6 cut(s)	183, 197, 206, 224, 266, 294
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	38, 214
MalI	GATC	5 cut(s)	6, 57, 89, 202, 246
MboI	GATC	5 cut(s)	4, 55, 87, 200, 244
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	2 cut(s)	211, 323
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	9 cut(s)	74, 117, 166, 200, 258, 279, 283, 324, 327
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	1 cut(s)	253
NdeII	GATC	5 cut(s)	4, 55, 87, 200, 244
NlaIII	CATG	2 cut(s)	170, 265
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	170
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	79, 152
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	2 cut(s)	211, 322
PpsI	GAGTC	2 cut(s)	211, 322
Ppu21I	YACGTR	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	278
PspXI	VCTCGAGB	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	5 cut(s)	4, 55, 87, 200, 244
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	211, 323
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	6 cut(s)	53, 109, 216, 225, 308, 338
SfcI	CTRYAG	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SnaBI	TACGTA	1 cut(s)	51
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	94, 340
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	86, 312
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	79, 152
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	165, 288
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	9, 71
TspRI	CASTG	2 cut(s)	165, 288
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	278
XceI	RCATGY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.