MD00G1182600.v1.1

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001317
Physical Location & Seq
Forward (+)
43162945 .. 43163142
198 bp
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UTR
Exon/CDS
Intron
MD00G1182600.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGAAAACACGATCAAGCATGCTATTGTGATCAAGGTTATGGGACGGACTGGATCTCGTGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTGGATGACCAGAACCGTTTCATCATGAGGAATGTCAAGGGACCAGTCAGAGAGGGGGATATCCTTACCTTGCTCGAGTCAGAGAGGGAGGCAAGAAGGTTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

66

Amino Acids

7.56

Weight (kDa)

11.16

Isoelectric Point (pI)

21.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 4 - 64 3.6e-32 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 61
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 57
BclI TGATCA 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 55, 134
BseGI GGATG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 55, 134
BsiHKCI CYCGRG 1 cut(s) 164
BslFI GGGAC 2 cut(s) 57, 144
BsmFI GGGAC 2 cut(s) 57, 144
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 3 cut(s) 12, 30, 53
BspACI CCGC 1 cut(s) 193
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 55, 134
BssMI GATC 3 cut(s) 12, 30, 53
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 21
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 15, 33, 56
BstMBI GATC 3 cut(s) 12, 30, 53
BstNSI RCATGY 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 2 cut(s) 20, 115
DpnI GATC 3 cut(s) 14, 32, 55
DpnII GATC 3 cut(s) 12, 30, 53
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 151
FaeI CATG 2 cut(s) 23, 118
FaiI YATR 3 cut(s) 21, 41, 116
FaqI GGGAC 2 cut(s) 57, 144
FatI CATG 2 cut(s) 19, 114
FbaI TGATCA 1 cut(s) 30
FokI GGATG 1 cut(s) 107
Hin1II CATG 2 cut(s) 23, 118
HinfI GANTC 3 cut(s) 70, 81, 167
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 140, 172
Hpy188III TCNNGA 2 cut(s) 92, 115
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 107
Hsp92II CATG 2 cut(s) 23, 118
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 3 cut(s) 12, 30, 53
LpnPI CCDG 5 cut(s) 36, 50, 77, 113, 147
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 14, 32, 55
MboI GATC 3 cut(s) 12, 30, 53
MflI RGATCY 1 cut(s) 53
MlyI GAGTC 3 cut(s) 64, 90, 176
MnlI CCTC 4 cut(s) 111, 136, 168, 172
MroXI GAANNNNTTC 1 cut(s) 107
NdeII GATC 3 cut(s) 12, 30, 53
NlaIII CATG 2 cut(s) 23, 118
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 107
PleI GAGTC 3 cut(s) 64, 89, 175
PpsI GAGTC 3 cut(s) 64, 89, 175
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
PspXI VCTCGAGB 1 cut(s) 164
PsuI RGATCY 1 cut(s) 53
Sau3AI GATC 3 cut(s) 12, 30, 53
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 3 cut(s) 64, 90, 176
SetI ASST 4 cut(s) 39, 69, 161, 191
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 72, 164
SmoI CTYRAG 2 cut(s) 72, 164
SphI GCATGC 1 cut(s) 23
SsiI CCGC 1 cut(s) 193
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 131
XceI RCATGY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.