Rh6AG160700

40s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001317
Physical Location & Seq
Forward (+)
25070316 .. 25081399
11084 bp
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UTR
Exon/CDS
Intron
Rh6AG160700.1

Sequence Viewer

Length: 417 bp
ATGAGAAATGTCAATGGTCCTATCCGGGAGGGCGACATCCTCACCCTGCTCGAGTCCGATAGAGAAGCAAGAAGGCGACCAATCTCAGGTCTCCGAGCTCTGCCTCCAGCCTTTCAAGCCCCACCGGCCACCGCCGAACTCGGGGTTGGAGACTTGGAGCACTTCCGAGTCCGGAAAACGGAACACAGCGAGCAACTTGCAAGGCTACAACCAGCAACCCCTCTTCGTCTTCTCCTCCTCGGCTCCTCAAGGTGTGTTGAAGTAGCTGGATGTGTTAGACGCGGAGAGTTAGCTGGTTGGGAGATGGTACCTGAAGCCCTGAAGAGGTGGATTGGGTCTTCAAAAAATAGAACACCCATTGAACAAAATTTGGACTTTGGGTCAGTTGTTGCGATTTCTGTATTGGGCATTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

138

Amino Acids

15.11

Weight (kDa)

9.37

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 1 - 25 5.1e-10 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 2 cut(s) 132, 282
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 2 cut(s) 333, 341
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 4 cut(s) 86, 141, 178, 324
AgsI TTSAA 4 cut(s) 116, 260, 342, 362
AhdI GACNNNNNGTC 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 3 cut(s) 98, 266, 293
AluI AGCT 3 cut(s) 98, 266, 293
Alw21I GWGCWC 2 cut(s) 100, 162
Alw26I GTCTC 2 cut(s) 95, 144
Ama87I CYCGRG 2 cut(s) 50, 140
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 367
Asp718I GGTACC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 2 cut(s) 50, 140
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 221, 330
Bbv12I GWGCWC 2 cut(s) 100, 162
BccI CCATC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 95, 144
BglI GCCNNNNNGGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 17
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 2 cut(s) 50, 140
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 244, 309
BmrFI CCNGG 1 cut(s) 26
BpiI GAAGAC 2 cut(s) 221, 330
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 141, 178, 324
Bse118I RCCGGY 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 36, 275
BseLI CCNNNNNNNGG 4 cut(s) 86, 141, 178, 324
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 224, 227, 235
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 2 cut(s) 100, 162
BsiHKCI CYCGRG 2 cut(s) 50, 140
BsiSI CCGG 3 cut(s) 25, 125, 172
BslI CCNNNNNNNGG 4 cut(s) 86, 141, 178, 324
BsmAI GTCTC 2 cut(s) 95, 144
BsnI GGCC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 2 cut(s) 50, 140
Bsp1286I GDGCHC 2 cut(s) 100, 162
Bsp13I TCCGGA 1 cut(s) 171
BspACI CCGC 2 cut(s) 132, 282
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 98
BspEI TCCGGA 1 cut(s) 171
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 244, 309
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 228, 317
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 36, 275
BstFNI CGCG 1 cut(s) 282
BstMAI GTCTC 2 cut(s) 95, 144
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstSCI CCNGG 1 cut(s) 24
BstUI CGCG 1 cut(s) 282
BstV2I GAAGAC 2 cut(s) 221, 330
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 36, 275
Cac8I GCNNGC 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 308
CviJI RGCY 9 cut(s) 98, 110, 119, 128, 205, 243, 266, 293, 317
CviKI_1 RGCY 9 cut(s) 98, 110, 119, 128, 205, 243, 266, 293, 317
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 85
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 228, 317
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 2 cut(s) 228, 317
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 333, 341
Eco88I CYCGRG 2 cut(s) 50, 140
EcoICRI GAGCTC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 100
FokI GGATG 2 cut(s) 23, 282
FriOI GRGCYC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 128
HapII CCGG 3 cut(s) 25, 125, 172
HgaI GACGC 1 cut(s) 288
HinfI GANTC 2 cut(s) 53, 168
HpaII CCGG 3 cut(s) 25, 125, 172
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 58, 95, 167
Hpy188III TCNNGA 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 1 cut(s) 85
Kpn2I TCCGGA 1 cut(s) 171
KpnI GGTACC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 157, 248
MboII GAAGA 4 cut(s) 215, 221, 330, 334
MhlI GDGCHC 2 cut(s) 100, 162
MluCI AATT 1 cut(s) 367
MlyI GAGTC 2 cut(s) 62, 177
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 8 cut(s) 22, 50, 114, 231, 245, 248, 256, 318
MroI TCCGGA 1 cut(s) 171
MspI CCGG 3 cut(s) 25, 125, 172
MspR9I CCNGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NciI CCSGG 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 244, 309
NmeAIII GCCGAG 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 24
PleI GAGTC 2 cut(s) 61, 176
PpsI GAGTC 2 cut(s) 61, 176
Psp124BI GAGCTC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 244, 309
PspPI GGNCC 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 50
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SacI GAGCTC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 62, 177
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 100, 162
SetI ASST 7 cut(s) 91, 100, 254, 268, 295, 313, 329
Sfr274I CTCGAG 1 cut(s) 50
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 50, 247
SmoI CTYRAG 2 cut(s) 50, 247
Sse9I AATT 1 cut(s) 367
SsiI CCGC 2 cut(s) 132, 282
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 24
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.