Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Forward (+)

57790999 .. 57792418

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGGAGAGGAGATTATGCATGTTCAAGGTTGATATGGAGGGGAAGAGAAAAGAAGAAGAAATGCCCGGGGAGATCGAATCAATAGTTGCTCTCTTTTCACCTGCACATGTGATGGAATCCTCAGTGAAGCATGCTGTTGTCGTGAAAGTTATGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTTAAAGTCAAGTTTCTGGATGATCAGAACAGGCATATCATGAGGAATGTCAAAGGACCAGTGAGGGAGGGAGATATTCTTACCTTGCTTGAGTCTGAAAGGGAAGCGAGGAGGTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

103

Amino Acids

11.88

Weight (kDa)

9.3

Isoelectric Point (pI)

61.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	42 - 102	3.3e-31	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	2 cut(s)	162, 175
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	28
AlwI	GGATC	2 cut(s)	162, 175
Ama87I	CYCGRG	2 cut(s)	68, 171
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	69, 70
AsuHPI	GGTGA	2 cut(s)	93, 193
AvaI	CYCGRG	2 cut(s)	68, 171
AvaII	GGWCC	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	167
BccI	CCATC	1 cut(s)	109
BcgI	CGANNNNNNTGC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	69, 70
BfuAI	ACCTGC	1 cut(s)	112
Bme1390I	CCNGG	2 cut(s)	69, 70
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	68, 171
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	69, 70
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	69, 70
BsaJI	CCNNGG	3 cut(s)	68, 69, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	169, 248
BseDI	CCNNGG	3 cut(s)	68, 69, 172
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	138, 200
BseNI	ACTGG	2 cut(s)	169, 248
BseRI	GAGGAG	2 cut(s)	20, 25
BsgI	GTGCAG	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	68, 171
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	178
BsoBI	CYCGRG	2 cut(s)	68, 171
Bsp143I	GATC	3 cut(s)	75, 167, 211
BspACI	CCGC	1 cut(s)	307
BspCNI	CTCAG	2 cut(s)	137, 199
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	162, 175
BsrI	ACTGG	2 cut(s)	169, 248
BssECI	CCNNGG	3 cut(s)	68, 69, 172
BssMI	GATC	3 cut(s)	75, 167, 211
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	124, 186
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	78, 170, 214
BstMBI	GATC	3 cut(s)	75, 167, 211
BstNSI	RCATGY	3 cut(s)	25, 113, 137
BstSCI	CCNGG	2 cut(s)	67, 68
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	132, 255
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	245
Cfr9I	CCCGGG	1 cut(s)	68
CviAII	CATG	4 cut(s)	22, 110, 134, 229
DdeI	CTNAG	2 cut(s)	124, 186
DpnI	GATC	3 cut(s)	77, 169, 213
DpnII	GATC	3 cut(s)	75, 167, 211
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	68, 171
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	4 cut(s)	25, 113, 137, 232
FaiI	YATR	8 cut(s)	19, 23, 38, 111, 135, 155, 225, 230
FatI	CATG	4 cut(s)	21, 109, 133, 228
FbaI	TGATCA	1 cut(s)	211
FokI	GGATG	1 cut(s)	221
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	4 cut(s)	25, 113, 137, 232
HinfI	GANTC	4 cut(s)	80, 119, 184, 281
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	93, 193
Hpy188I	TCNGA	3 cut(s)	162, 216, 286
Hpy188III	TCNNGA	4 cut(s)	145, 171, 206, 229
HpyCH4V	TGCA	2 cut(s)	21, 107
HpyF3I	CTNAG	2 cut(s)	124, 186
Hsp92II	CATG	4 cut(s)	25, 113, 137, 232
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	75, 167, 211
LpnPI	CCDG	8 cut(s)	82, 117, 150, 164, 173, 191, 205, 261
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	77, 169, 213
MboI	GATC	3 cut(s)	75, 167, 211
MboII	GAAGA	3 cut(s)	58, 68, 71
MflI	RGATCY	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	178, 290
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	9 cut(s)	3, 34, 133, 167, 225, 246, 250, 291, 294
Mph1103I	ATGCAT	1 cut(s)	23
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	69, 70
NciI	CCSGG	2 cut(s)	69, 70
NdeII	GATC	3 cut(s)	75, 167, 211
NlaIII	CATG	4 cut(s)	25, 113, 137, 232
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	3 cut(s)	25, 113, 137
PaeI	GCATGC	1 cut(s)	137
PagI	TCATGA	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	112
PciI	ACATGT	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	80, 119
PleI	GAGTC	2 cut(s)	178, 289
PpsI	GAGTC	2 cut(s)	178, 289
PscI	ACATGT	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	75, 167, 211
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	178, 290
ScrFI	CCNGG	2 cut(s)	69, 70
SetI	ASST	6 cut(s)	33, 106, 183, 192, 275, 305
SinI	GGWCC	1 cut(s)	245
SmaI	CCCGGG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	137
SsiI	CCGC	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	67, 68
TaqI	TCGA	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	80, 119
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	132, 255
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspMI	CCCGGG	1 cut(s)	68
TspRI	CASTG	2 cut(s)	132, 255
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	3 cut(s)	25, 113, 137
XmaI	CCCGGG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.