Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002404.1

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 548

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002404.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 385 bp

acaccaagccaagccgcctcttcctcctccagaccctcgtcttgagctcccaaatctgagcatggaatcgattgtgaagcacaccctggtgaaccggttcatcatgagaaatgtcaatggtcctatccgggagggcgacatcctcaccctgctcgagtccgatagagaagcaagaaggcgaccaatctcaggtctccgagctctgcctccagcctttcaagccccaccggccaccgccgaactcggggttggagacttggagcacttccgagtctggaaaacggaacacagcgagcaacttgcaaggctacaaccagcaaacccctcttcgtcttctcctcctcagctcctcaagtcctcctcttcttctcttctgagtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

127

Amino Acids

14.05

Weight (kDa)

9.51

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 235
AcoI	YGGCCR	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	189, 244
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	47, 201, 347
AluI	AGCT	3 cut(s)	47, 201, 347
Alw21I	GWGCWC	3 cut(s)	49, 203, 265
Alw26I	GTCTC	2 cut(s)	198, 247
Ama87I	CYCGRG	2 cut(s)	153, 243
AoxI	GGCC	1 cut(s)	229
AsiGI	ACCGGT	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	101, 137
AvaI	CYCGRG	2 cut(s)	153, 243
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	2 cut(s)	49, 203
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	3 cut(s)	49, 203, 265
BbvCI	CCTCAGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	198, 247
BglI	GCCNNNNNGGC	1 cut(s)	228
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	87, 129
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	2 cut(s)	153, 243
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	87, 129
BoxI	GACNNNNGTC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	13, 193
Bpu10I	CCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	2 cut(s)	63, 336
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 244
Bse118I	RCCGGY	2 cut(s)	94, 227
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	189, 244
BseMII	CTCAG	4 cut(s)	48, 202, 357, 366
BseRI	GAGGAG	5 cut(s)	16, 328, 331, 339, 350
BshFI	GGCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	3 cut(s)	49, 203, 265
BsiHKCI	CYCGRG	2 cut(s)	153, 243
BsiSI	CCGG	3 cut(s)	95, 128, 228
BslI	CCNNNNNNNGG	2 cut(s)	189, 244
BsmAI	GTCTC	2 cut(s)	198, 247
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	153, 243
Bsp1286I	GDGCHC	3 cut(s)	49, 203, 265
BspACI	CCGC	2 cut(s)	15, 235
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	49, 201, 356, 367
BspDI	ATCGAT	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	94, 227
BssAI	RCCGGY	2 cut(s)	94, 227
BssECI	CCNNGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	4 cut(s)	25, 332, 368, 376
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	57, 188, 343, 375
BstF5I	GGATG	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	198, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 228
BstNI	CCWGG	1 cut(s)	87
BstPAI	GACNNNNGTC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	85, 127
BstV2I	GAAGAC	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	94, 227
Cfr13I	GGNCC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	69
CspAI	ACCGGT	1 cut(s)	94
CviAII	CATG	2 cut(s)	62, 104
CviJI	RGCY	9 cut(s)	9, 14, 47, 201, 213, 222, 231, 308, 347
CviKI_1	RGCY	9 cut(s)	9, 14, 47, 201, 213, 222, 231, 308, 347
DdeI	CTNAG	4 cut(s)	57, 188, 343, 375
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	4 cut(s)	25, 332, 368, 376
EarI	CTCTTC	4 cut(s)	25, 332, 368, 376
Ecl136II	GAGCTC	2 cut(s)	47, 201
Eco24I	GRGCYC	2 cut(s)	49, 203
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	2 cut(s)	47, 201
Eco88I	CYCGRG	2 cut(s)	153, 243
EcoICRI	GAGCTC	2 cut(s)	47, 201
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	49, 203
FaeI	CATG	2 cut(s)	65, 107
FaiI	YATR	2 cut(s)	63, 105
FatI	CATG	2 cut(s)	61, 103
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	126
FriOI	GRGCYC	2 cut(s)	49, 203
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	13, 193
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	95, 128, 228
Hin1II	CATG	2 cut(s)	65, 107
HinfI	GANTC	3 cut(s)	66, 156, 271
HpaII	CCGG	3 cut(s)	95, 128, 228
HphI	GGTGA	2 cut(s)	101, 137
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	5 cut(s)	58, 161, 198, 270, 376
Hpy188III	TCNNGA	4 cut(s)	30, 42, 104, 275
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 228
HpyF3I	CTNAG	4 cut(s)	57, 188, 343, 375
Hsp92II	CATG	2 cut(s)	65, 107
LmnI	GCTCC	3 cut(s)	52, 260, 352
MboII	GAAGA	6 cut(s)	12, 319, 325, 355, 358, 363
MhlI	GDGCHC	3 cut(s)	49, 203, 265
MlyI	GAGTC	2 cut(s)	165, 280
MmeI	TCCRAC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	3 cut(s)	95, 128, 228
MspR9I	CCNGG	2 cut(s)	87, 129
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	219, 228
NciI	CCSGG	1 cut(s)	129
NlaIII	CATG	2 cut(s)	65, 107
OliI	CACNNNNGTG	1 cut(s)	87
PaeR7I	CTCGAG	1 cut(s)	153
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	127
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	164, 279
PpsI	GAGTC	2 cut(s)	164, 279
PshAI	GACNNNNGTC	1 cut(s)	37
Psp124BI	GAGCTC	2 cut(s)	49, 203
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	2 cut(s)	49, 203
SatI	GCNGC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	165, 280
ScrFI	CCNGG	2 cut(s)	87, 129
SduI	GDGCHC	3 cut(s)	49, 203, 265
SetI	ASST	4 cut(s)	49, 194, 203, 349
Sfr274I	CTCGAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	3 cut(s)	42, 153, 351
SmoI	CTYRAG	3 cut(s)	42, 153, 351
SsiI	CCGC	2 cut(s)	15, 235
SstI	GAGCTC	2 cut(s)	49, 203
StyD4I	CCNGG	2 cut(s)	85, 127
TaqI	TCGA	2 cut(s)	69, 154
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	120
XhoI	CTCGAG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.