Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Forward (+)

4268997 .. 4270604

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAATTATGTTAGAATAACTATTGCTACAACTGGGTTAAAATTAAAAGATCATTGTCATAATTTTTCTTGTTTCGTTTTTCATATAATCAGACTCACTTGGCAAAACAGTAAACCCAACCCAAACCCTAGTCGACTAAACTATATTAACTCTCTTGAGCGATTCAACACACCCTTAGCAGCGCCGTTCCTTCGTCTTGAGCGATTCAACACACCCTTTTCCGACGCCGTTTTTCGTCTTCTCCAAGCTCCTGCAGTCACTTCTGAAACTCCAACCTCCAGAATGGAAAACACGATCAAGCATGCTATTGTGATCAAGGTGATGGGACGGACTGGATCTCGTGGGCAGGTGACTCAAGTGAGGGTCAAGTTTCTGGATGACCAGAACCGTTTCATCATGAGGAACGTCAAGGGACCAGTCAGGGAGGGGGATATCCTTACCCTGCTCGAGTCCGAGAGGGAGGCAAGAAGGTTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

160

Amino Acids

18.41

Weight (kDa)

10.84

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	98 - 158	4.9e-31	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	166, 208
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AlwI	GGATC	1 cut(s)	343
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	331, 361
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	2 cut(s)	169, 212
BclI	TGATCA	1 cut(s)	312
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	175
BpuEI	CTTGAG	3 cut(s)	176, 218, 339
BsaHI	GRCGYC	1 cut(s)	225
Bse1I	ACTGG	3 cut(s)	37, 337, 416
BseGI	GGATG	1 cut(s)	382
BseNI	ACTGG	3 cut(s)	37, 337, 416
BseXI	GCAGC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	339, 426
BsmFI	GGGAC	2 cut(s)	339, 426
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	4 cut(s)	49, 294, 312, 335
BspACI	CCGC	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	37, 337, 416
BssMI	GATC	4 cut(s)	49, 294, 312, 335
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	110, 389
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	4 cut(s)	52, 297, 315, 338
BstMBI	GATC	4 cut(s)	49, 294, 312, 335
BstNSI	RCATGY	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	382
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	233
CviAII	CATG	2 cut(s)	302, 397
CviJI	RGCY	1 cut(s)	248
CviKI_1	RGCY	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	4 cut(s)	51, 296, 314, 337
DpnII	GATC	4 cut(s)	49, 294, 312, 335
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	2 cut(s)	305, 400
FaiI	YATR	7 cut(s)	9, 60, 84, 86, 144, 303, 398
FaqI	GGGAC	2 cut(s)	339, 426
FatI	CATG	2 cut(s)	301, 396
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	185
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	305, 400
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HinfI	GANTC	5 cut(s)	93, 162, 204, 352, 449
HphI	GGTGA	2 cut(s)	331, 361
Hpy166II	GTNNAC	2 cut(s)	113, 134
Hpy188I	TCNGA	4 cut(s)	92, 223, 265, 454
Hpy188III	TCNNGA	5 cut(s)	155, 197, 279, 374, 397
Hpy8I	GTNNAC	2 cut(s)	113, 134
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	200, 462
HpyCH4III	ACNGT	2 cut(s)	110, 389
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	305, 400
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	49, 294, 312, 335
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	256, 349
MalI	GATC	4 cut(s)	51, 296, 314, 337
MboI	GATC	4 cut(s)	49, 294, 312, 335
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	335
MluCI	AATT	3 cut(s)	4, 41, 61
MlyI	GAGTC	3 cut(s)	87, 346, 458
MmeI	TCCRAC	2 cut(s)	246, 296
MnlI	CCTC	6 cut(s)	286, 354, 393, 418, 450, 454
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	38, 44, 147
NdeII	GATC	4 cut(s)	49, 294, 312, 335
NlaIII	CATG	2 cut(s)	305, 400
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	256, 349
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	1 cut(s)	396
PaqCI	CACCTGC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	162, 204
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	3 cut(s)	87, 346, 457
PpsI	GAGTC	3 cut(s)	87, 346, 457
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	413
PspXI	VCTCGAGB	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	38, 44, 147
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	49, 294, 312, 335
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	3 cut(s)	87, 346, 458
SetI	ASST	6 cut(s)	250, 278, 321, 351, 408, 473
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	4 cut(s)	155, 197, 354, 446
SmoI	CTYRAG	4 cut(s)	155, 197, 354, 446
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	4, 41, 61
SsiI	CCGC	1 cut(s)	475
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	110, 389
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	133, 447
TasI	AATT	3 cut(s)	4, 41, 61
TfiI	GAWTC	2 cut(s)	162, 204
Tru1I	TTAA	3 cut(s)	38, 44, 147
Tru9I	TTAA	3 cut(s)	38, 44, 147
TseFI	GTSAC	2 cut(s)	256, 349
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	2 cut(s)	256, 349
TspDTI	ATGAA	3 cut(s)	17, 71, 382
TspGWI	ACGGA	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	413
XceI	RCATGY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.