pycom14g03940

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001317
Physical Location & Seq
Forward (+)
3414988 .. 3415185
198 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03940.1

Sequence Viewer

Length: 198 bp
ATGGAAAACACGATCAAGCATGCTATTGTGATCAAGGTTATGGGACGGACTGGATCTCGTGGCCAGGTGACTCAAGTGAGAGTCAAGTTTCTGGATGACCAGAACCGTTTCATCATGAGGAATGTAAAGGGTCCAGTCAGAGAGGGGGATATCCTTACCTTGCTTGAGTCCGAGAGGGAGGCAAGAAGGTTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

66

Amino Acids

7.56

Weight (kDa)

11.16

Isoelectric Point (pI)

21.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S28e PF01200 4 - 64 3.6e-32 Ribosomal protein S28e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 61
AjnI CCWGG 1 cut(s) 63
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 63
BauI CACGAG 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 57, 185
Bse1I ACTGG 2 cut(s) 55, 134
BseBI CCWGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 55, 134
BshFI GGCC 1 cut(s) 63
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 12, 30, 53
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 63
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 55, 134
BssMI GATC 3 cut(s) 12, 30, 53
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 21
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 15, 33, 56
BstMBI GATC 3 cut(s) 12, 30, 53
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 2 cut(s) 20, 115
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
DpnI GATC 3 cut(s) 14, 32, 55
DpnII GATC 3 cut(s) 12, 30, 53
EaeI YGGCCR 1 cut(s) 61
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 63
EcoRV GATATC 1 cut(s) 151
FaeI CATG 2 cut(s) 23, 118
FaiI YATR 3 cut(s) 21, 41, 116
FaqI GGGAC 1 cut(s) 57
FatI CATG 2 cut(s) 19, 114
FbaI TGATCA 1 cut(s) 30
FokI GGATG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 63
Hin1II CATG 2 cut(s) 23, 118
HinfI GANTC 3 cut(s) 70, 81, 167
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 140, 172
Hpy188III TCNNGA 2 cut(s) 92, 115
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 107
Hsp92II CATG 2 cut(s) 23, 118
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 3 cut(s) 12, 30, 53
LpnPI CCDG 6 cut(s) 36, 50, 77, 77, 113, 147
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 14, 32, 55
MboI GATC 3 cut(s) 12, 30, 53
MflI RGATCY 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 63
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 3 cut(s) 64, 90, 176
MnlI CCTC 4 cut(s) 111, 136, 168, 172
Mox20I TGGCCA 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 63
Msp20I TGGCCA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
NdeII GATC 3 cut(s) 12, 30, 53
NlaIII CATG 2 cut(s) 23, 118
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 107
PleI GAGTC 3 cut(s) 64, 89, 175
PpsI GAGTC 3 cut(s) 64, 89, 175
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 1 cut(s) 53
Sau3AI GATC 3 cut(s) 12, 30, 53
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 3 cut(s) 64, 90, 176
ScrFI CCNGG 1 cut(s) 65
SetI ASST 4 cut(s) 39, 69, 161, 191
SinI GGWCC 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 72, 164
SmoI CTYRAG 2 cut(s) 72, 164
SphI GCATGC 1 cut(s) 23
SsiI CCGC 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 107
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 131
XceI RCATGY 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.