AT3G12660

Fasciclin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001500
Physical Location & Seq
Forward (+)
4019060 .. 4019827
768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12660.1

Sequence Viewer

Length: 768 bp
ATGTCTTCTTCACTTACAATCTTCTTCTTCTTTTTTGCTTCCACATTCCTCTACACTTCATCAAATTCATTCAACATCACTAACATCTTAAACGAGCACGATGATTTCTCAAATTTCAACCAGCTTCTCTCCGAAACTCAGCTCGCTTCTACCATCAACAAACGTCAAACCATAACCGTCCTTGTGGTTTCCAACGGTGCACTCTCCTCTCTCTCTGGCCAACCAACCTCCGTCATCAAGAAAATCCTTAGCCTTCACATTGTTTTAGATTACTACGACCAGAAGAAACTCAAGAATCTGAGCAAGAAAACAGTACTCCTCACCACTCTTTTCCAATCTAGCGGTCTAGCCAGAGGCCAACAAGGGTTCTTGAACGCAACCGTTATGAAAAACGGAGACGTGGCGTTTGGTTCTGCGGTTCCTGGGTCTAGCCTTGATGCTCAGCTTCAAGACACTGTAGCAGCACTACCGTTTAACATCTCTGTGCTTCATATTAGTAGTGCTATAATGATTGATGTTAAAGGTGATAATGCACCTACTGCTTCTCCTTTGTCACCGGTATCATCTCCACCACGCCCTGCAGAATCACCTAATGATGATGGTCAAGATTTTGACGAGCCACCATCCTCTGCTCCTGGTGCTGCTGCTGATGAACCTTCCGAAAACGCCGGCTCAGCTAATGGAGTTTCAAGAAACGATTCTCAGCCCGCTTTCGCGTTTACGCTGTTGATGTCATTCATTTGGTGGTTCATGGCTCGACTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

255

Amino Acids

27.38

Weight (kDa)

5.1

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 35 - 104 1.1e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 716
AciI CCGC 3 cut(s) 342, 416, 708
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 64, 112
AfaI GTAC 1 cut(s) 315
AgeI ACCGGT 1 cut(s) 556
AgsI TTSAA 5 cut(s) 73, 118, 373, 449, 690
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 2 cut(s) 421, 634
AluBI AGCT 4 cut(s) 124, 142, 445, 677
AluI AGCT 4 cut(s) 124, 142, 445, 677
Alw21I GWGCWC 2 cut(s) 99, 202
Alw26I GTCTC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 198
AoxI GGCC 2 cut(s) 217, 355
ApaLI GTGCAC 1 cut(s) 198
ApeKI GCWGC 3 cut(s) 461, 641, 644
ApoI RAATTY 2 cut(s) 64, 112
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsiGI ACCGGT 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 697
AsuHPI GGTGA 4 cut(s) 313, 536, 546, 579
BaeGI GKGCMC 1 cut(s) 202
BalI TGGCCA 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 99, 202
BbvI GCAGC 3 cut(s) 473, 628, 631
BccI CCATC 3 cut(s) 161, 593, 631
BciT130I CCWGG 2 cut(s) 423, 636
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 3 cut(s) 339, 347, 429
BfmI CTRYAG 2 cut(s) 456, 579
BisI GCNGC 3 cut(s) 462, 642, 645
BlpI GCTNAGC 2 cut(s) 441, 673
BlsI GCNGC 3 cut(s) 463, 643, 646
BmcAI AGTACT 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 423, 636
BmgBI CACGTC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 423, 636
BmsI GCATC 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 248
Bpu1102I GCTNAGC 2 cut(s) 441, 673
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bse118I RCCGGY 2 cut(s) 556, 668
BseBI CCWGG 2 cut(s) 423, 636
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 1 cut(s) 623
BseMII CTCAG 5 cut(s) 152, 290, 455, 687, 716
BseRI GAGGAG 2 cut(s) 196, 308
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 3 cut(s) 473, 628, 631
Bsh1236I CGCG 1 cut(s) 716
BshFI GGCC 2 cut(s) 219, 357
BshTI ACCGGT 1 cut(s) 556
BsiHKAI GWGCWC 2 cut(s) 99, 202
BsiSI CCGG 2 cut(s) 557, 669
BsmAI GTCTC 1 cut(s) 390
BsmBI CGTCTC 1 cut(s) 390
BsnI GGCC 2 cut(s) 219, 357
Bsp1286I GDGCHC 2 cut(s) 99, 202
Bsp1720I GCTNAGC 2 cut(s) 441, 673
BspACI CCGC 3 cut(s) 342, 416, 708
BspANI GGCC 2 cut(s) 219, 357
BspCNI CTCAG 5 cut(s) 151, 291, 454, 686, 715
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 583
BsrFI RCCGGY 2 cut(s) 556, 668
BssAI RCCGGY 2 cut(s) 556, 668
BssECI CCNNGG 1 cut(s) 422
Bst2UI CCWGG 2 cut(s) 423, 636
Bst4CI ACNGT 6 cut(s) 178, 197, 313, 382, 457, 471
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 3 cut(s) 144, 670, 708
BstDEI CTNAG 6 cut(s) 138, 248, 299, 441, 673, 702
BstF5I GGATG 1 cut(s) 623
BstFNI CGCG 1 cut(s) 716
BstMAI GTCTC 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 539, 638, 674
BstNI CCWGG 2 cut(s) 423, 636
BstSCI CCNGG 2 cut(s) 421, 634
BstSFI CTRYAG 2 cut(s) 456, 579
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 3 cut(s) 473, 628, 631
BsuRI GGCC 2 cut(s) 219, 357
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 623
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 144, 670, 708
Cfr10I RCCGGY 2 cut(s) 556, 668
Csp6I GTAC 1 cut(s) 314
CspAI ACCGGT 1 cut(s) 556
CviAII CATG 1 cut(s) 751
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 6 cut(s) 138, 248, 299, 441, 673, 702
EaeI YGGCCR 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 421, 634
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 1 cut(s) 754
FaiI YATR 5 cut(s) 173, 386, 492, 506, 752
FatI CATG 1 cut(s) 750
FauI CCCGC 1 cut(s) 715
Fnu4HI GCNGC 3 cut(s) 462, 642, 645
FokI GGATG 1 cut(s) 610
Fsp4HI GCNGC 3 cut(s) 462, 642, 645
FspBI CTAG 3 cut(s) 339, 347, 429
GluI GCNGC 3 cut(s) 462, 642, 645
HaeIII GGCC 2 cut(s) 219, 357
HapII CCGG 2 cut(s) 557, 669
Hin1II CATG 1 cut(s) 754
HinfI GANTC 3 cut(s) 295, 584, 698
HpaII CCGG 2 cut(s) 557, 669
HphI GGTGA 4 cut(s) 313, 536, 546, 579
Hpy166II GTNNAC 2 cut(s) 200, 720
Hpy188I TCNGA 3 cut(s) 133, 300, 661
Hpy188III TCNNGA 6 cut(s) 238, 292, 370, 449, 605, 690
Hpy8I GTNNAC 2 cut(s) 200, 720
HpyAV CCTTC 2 cut(s) 263, 666
HpyCH4III ACNGT 6 cut(s) 178, 197, 313, 382, 457, 471
HpyCH4IV ACGT 2 cut(s) 163, 399
HpyCH4V TGCA 3 cut(s) 200, 533, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 539, 638, 674
HpyF3I CTNAG 6 cut(s) 138, 248, 299, 441, 673, 702
HpySE526I ACGT 2 cut(s) 163, 399
Hsp92II CATG 1 cut(s) 754
KroI GCCGGC 1 cut(s) 668
KroNI GCCGGC 1 cut(s) 670
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 473, 628, 631
LweI GCATC 1 cut(s) 427
MaeI CTAG 3 cut(s) 339, 347, 429
MaeII ACGT 2 cut(s) 163, 399
MaeIII GTNAC 1 cut(s) 552
MboII GAAGA 4 cut(s) 13, 16, 19, 295
MhlI GDGCHC 2 cut(s) 99, 202
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 2 cut(s) 64, 112
MluNI TGGCCA 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 59, 217, 238, 329, 347, 637
Mox20I TGGCCA 1 cut(s) 219
MroNI GCCGGC 1 cut(s) 668
MroXI GAANNNNTTC 1 cut(s) 697
MscI TGGCCA 1 cut(s) 219
MseI TTAA 3 cut(s) 89, 474, 519
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 2 cut(s) 557, 669
MspR9I CCNGG 2 cut(s) 423, 636
MvaI CCWGG 2 cut(s) 423, 636
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 3 cut(s) 539, 638, 674
NaeI GCCGGC 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 668
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 670
PdmI GAANNNNTTC 1 cut(s) 697
PfeI GAWTC 3 cut(s) 295, 584, 698
PinAI ACCGGT 1 cut(s) 556
PkrI GCNGC 3 cut(s) 463, 643, 646
Psp6I CCWGG 2 cut(s) 421, 634
PspGI CCWGG 2 cut(s) 421, 634
PspN4I GGNNCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 583
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 3 cut(s) 89, 474, 519
SatI GCNGC 3 cut(s) 462, 642, 645
ScaI AGTACT 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 423, 636
SduI GDGCHC 2 cut(s) 99, 202
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 2 cut(s) 456, 579
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 64, 112
SsiI CCGC 3 cut(s) 342, 416, 708
SspMI CTAG 3 cut(s) 339, 347, 429
StyD4I CCNGG 2 cut(s) 421, 634
TaaI ACNGT 6 cut(s) 178, 197, 313, 382, 457, 471
TaiI ACGT 2 cut(s) 166, 402
TaqI TCGA 2 cut(s) 757, 763
TasI AATT 2 cut(s) 64, 112
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 3 cut(s) 295, 584, 698
Tru1I TTAA 3 cut(s) 89, 474, 519
Tru9I TTAA 3 cut(s) 89, 474, 519
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 552
TseI GCWGC 3 cut(s) 461, 641, 644
Tsp45I GTSAC 1 cut(s) 552
TspDTI ATGAA 7 cut(s) 48, 57, 401, 479, 666, 727, 739
TspGWI ACGGA 2 cut(s) 220, 408
TspRI CASTG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 198
XapI RAATTY 2 cut(s) 64, 112
XmnI GAANNNNTTC 1 cut(s) 697
XspI CTAG 3 cut(s) 339, 347, 429
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.