Rh2CG337300

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001500
Physical Location & Seq
Reverse (-)
44676299 .. 44710384
34086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG337300.1

Sequence Viewer

Length: 1011 bp
ATGGATTACATTAGGTATGGGGGTCATTTCTTGATTGGTATTCGAGGGCCTAGAGAGGATGCAGTGGATATGCGAAAGCAAATCATTGAGTTTTGTGAGAGAAGATTCGGGTTAAGTCCTCAGTTTTCCAAGATGTATTTTCCAATTTCTACTCTCTTGCTCTCCTTCTTCCTTTTCTCTTGTTCATCTGCTTTCAACATCACCAACATATTAAACGACCACAAAGATTTCAGCACCTTCAATGACTACTTAACCCGAACCACAGTTGCCGACCAGATCAACAAACGCGAGAGCCTCACAATCTTCGTAGTCGACAATGGTGGGATGGGTTCGGTCACTGGAAAATCATTGGACATGGTCGCAAAGATTTTGAGCCTCCACGTTGCCCTAGAGTACTTTGACACCTCAAAGCTCCAACACTTGCCGACAGACCAGCCAACCCTTATGACCACACTGCTTCAAGCCAACGCCCAAGCAACTGGCCAACAGGGTTTCTTGAAAGCCACAATCGGCGGTAACAGCAGCGAAGGAGGAATCACGATTTCTTCAGCTTCTAGTTCTGATCAGAGCGCACATGTAGTCAGTAGTGTTACGAGTCAGCCGTATAACATTTCCGTGATCCAAATTAGCAATGCAATAATGCCTAATATCATCTCTCCACCAGCTGCAGCTCCTACTCTTTTGCCTTCGAAAAGCCCAGCCAACTCTCCGAAATCAGCTTCGCCAAAGGGCTTGTTGGACTCTCCAAATGCGGCTCCAGGTACCGGTACTGCAGATGGTTCCACTGCAGCCTCTCCAGATGCTAAGTCATCTGGGACATCAGTGTTTTCCGTTACCCATGCTTTTGTCATCTCTCGAAAGGAAGAAAGAGGATTAAGGGAAGGGAAGGATACAGAAGAAAGAGGATTGGTGATAAAGCGAGGATGGCAGACTATAACAAATGGAGACCCAATGAGCCGTGTTTGCCCGAGAATAAAGCAAACTAGGAGAGAATTGTTTAGTTGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

336

Amino Acids

36.4

Weight (kDa)

8.91

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 761
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 288
AciI CCGC 2 cut(s) 513, 752
AclWI GGATC 1 cut(s) 613
AcoI YGGCCR 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 3 cut(s) 395, 763, 769
AfiI CCNNNNNNNGG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 574
AgeI ACCGGT 1 cut(s) 764
AgsI TTSAA 4 cut(s) 196, 241, 461, 499
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 5 cut(s) 412, 551, 665, 671, 719
AluI AGCT 5 cut(s) 412, 551, 665, 671, 719
Alw26I GTCTC 1 cut(s) 939
AlwI GGATC 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 967
AoxI GGCC 2 cut(s) 47, 481
ApeKI GCWGC 4 cut(s) 522, 665, 668, 788
AsiGI ACCGGT 1 cut(s) 764
Asp718I GGTACC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 193, 922
AsuII TTCGAA 1 cut(s) 689
AvaI CYCGRG 1 cut(s) 967
BalI TGGCCA 1 cut(s) 483
BanI GGYRCC 1 cut(s) 761
BbvI GCAGC 4 cut(s) 534, 652, 680, 800
BccI CCATC 3 cut(s) 319, 770, 918
BceAI ACGGC 2 cut(s) 586, 942
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 883
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 939
BfaI CTAG 4 cut(s) 51, 389, 555, 984
BfmI CTRYAG 3 cut(s) 666, 771, 786
BfuI GTATCC 1 cut(s) 883
BisI GCNGC 5 cut(s) 523, 666, 669, 753, 789
BlsI GCNGC 5 cut(s) 524, 667, 670, 754, 790
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 759
BmeT110I CYCGRG 1 cut(s) 967
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 3 cut(s) 756, 763, 781
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 49, 790
BpmI CTGGAG 2 cut(s) 741, 780
Bpu14I TTCGAA 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 939
BsaWI WCCGGW 1 cut(s) 764
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 2 cut(s) 343, 484
Bse3DI GCAATG 1 cut(s) 637
BseBI CCWGG 1 cut(s) 759
BseGI GGATG 3 cut(s) 64, 330, 929
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 343, 484
BseXI GCAGC 4 cut(s) 534, 652, 680, 800
BseYI CCCAGC 1 cut(s) 697
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 2 cut(s) 49, 483
BshNI GGYRCC 1 cut(s) 761
BshTI ACCGGT 1 cut(s) 764
BsiHKCI CYCGRG 1 cut(s) 967
BsiSI CCGG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 829
BsnI GGCC 2 cut(s) 49, 483
Bso31I GGTCTC 1 cut(s) 939
BsoBI CYCGRG 1 cut(s) 967
Bsp119I TTCGAA 1 cut(s) 689
Bsp143I GATC 3 cut(s) 276, 562, 618
BspACI CCGC 2 cut(s) 513, 752
BspANI GGCC 2 cut(s) 49, 483
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 756, 763, 781
BspMAI CTGCAG 3 cut(s) 670, 775, 790
BspPI GGATC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 761
BspTNI GGTCTC 1 cut(s) 939
BsrDI GCAATG 1 cut(s) 637
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 2 cut(s) 343, 484
BssAI RCCGGY 1 cut(s) 764
BssMI GATC 3 cut(s) 276, 562, 618
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 689
BstDEI CTNAG 2 cut(s) 120, 804
BstF5I GGATG 3 cut(s) 64, 330, 929
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 3 cut(s) 279, 565, 621
BstMAI GTCTC 1 cut(s) 939
BstMBI GATC 3 cut(s) 276, 562, 618
BstMWI GCNNNNNNNGC 3 cut(s) 519, 925, 963
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 3 cut(s) 666, 771, 786
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 534, 652, 680, 800
BstXI CCANNNNNNTGG 1 cut(s) 479
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 2 cut(s) 49, 483
BtsCI GGATG 3 cut(s) 64, 330, 929
BtsI GCAGTG 3 cut(s) 69, 452, 783
BtsIMutI CAGTG 6 cut(s) 69, 336, 452, 783, 828, 1006
CfoI GCGC 1 cut(s) 572
Cfr10I RCCGGY 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 394, 762, 768
CspAI ACCGGT 1 cut(s) 764
CviAII CATG 3 cut(s) 355, 575, 839
CviQI GTAC 3 cut(s) 394, 762, 768
DdeI CTNAG 2 cut(s) 120, 804
DpnI GATC 3 cut(s) 278, 564, 620
DpnII GATC 3 cut(s) 276, 562, 618
EaeI YGGCCR 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 939
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 757
FaeI CATG 3 cut(s) 358, 578, 842
FaiI YATR 9 cut(s) 18, 71, 209, 356, 446, 576, 606, 840, 935
FaqI GGGAC 1 cut(s) 829
FatI CATG 3 cut(s) 354, 574, 838
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 5 cut(s) 523, 666, 669, 753, 789
FokI GGATG 3 cut(s) 71, 337, 936
Fsp4HI GCNGC 5 cut(s) 523, 666, 669, 753, 789
FspBI CTAG 4 cut(s) 51, 389, 555, 984
GlaI GCGC 1 cut(s) 571
GluI GCNGC 5 cut(s) 523, 666, 669, 753, 789
GsaI CCCAGC 1 cut(s) 701
GsuI CTGGAG 2 cut(s) 741, 780
HaeIII GGCC 2 cut(s) 49, 483
HapII CCGG 1 cut(s) 765
HhaI GCGC 1 cut(s) 572
Hin1II CATG 3 cut(s) 358, 578, 842
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 4 cut(s) 105, 534, 595, 740
HpaII CCGG 1 cut(s) 765
HphI GGTGA 2 cut(s) 193, 922
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 562, 567, 711
Hpy188III TCNNGA 5 cut(s) 31, 496, 538, 797, 855
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 6 cut(s) 175, 247, 521, 696, 875, 880
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 5 cut(s) 62, 635, 668, 773, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 519, 925, 963
HpyF3I CTNAG 2 cut(s) 120, 804
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 3 cut(s) 358, 578, 842
HspAI GCGC 1 cut(s) 570
KpnI GGTACC 1 cut(s) 765
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 276, 562, 618
LmnI GCTCC 3 cut(s) 417, 676, 760
Lsp1109I GCAGC 4 cut(s) 534, 652, 680, 800
LweI GCATC 2 cut(s) 49, 790
MaeI CTAG 4 cut(s) 51, 389, 555, 984
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 4 cut(s) 334, 515, 589, 832
MalI GATC 3 cut(s) 278, 564, 620
MboI GATC 3 cut(s) 276, 562, 618
MboII GAAGA 6 cut(s) 114, 160, 295, 537, 875, 908
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 3 cut(s) 144, 624, 992
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 2 cut(s) 604, 734
MmeI TCCRAC 2 cut(s) 439, 717
Mox20I TGGCCA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 483
MseI TTAA 4 cut(s) 113, 212, 251, 875
MslI CAYNNNNRTG 1 cut(s) 614
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 519, 925, 963
NdeII GATC 3 cut(s) 276, 562, 618
NlaIII CATG 3 cut(s) 358, 578, 842
NlaIV GGNNCC 3 cut(s) 756, 763, 781
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 578
NspV TTCGAA 1 cut(s) 689
PciI ACATGT 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PfeI GAWTC 2 cut(s) 105, 534
PflFI GACNNNGTC 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 764
PkrI GCNGC 5 cut(s) 524, 667, 670, 754, 790
PleI GAGTC 2 cut(s) 603, 734
PpsI GAGTC 2 cut(s) 603, 734
PscI ACATGT 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 757
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 3 cut(s) 756, 763, 781
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 3 cut(s) 670, 775, 790
PsyI GACNNNGTC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 3 cut(s) 395, 763, 769
RsaNI GTAC 3 cut(s) 394, 762, 768
RseI CAYNNNNRTG 1 cut(s) 614
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 4 cut(s) 113, 212, 251, 875
SatI GCNGC 5 cut(s) 523, 666, 669, 753, 789
Sau3AI GATC 3 cut(s) 276, 562, 618
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 2 cut(s) 604, 734
ScrFI CCNGG 1 cut(s) 759
SfaNI GCATC 2 cut(s) 49, 790
SfcI CTRYAG 3 cut(s) 666, 771, 786
SfuI TTCGAA 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 614
Sse9I AATT 3 cut(s) 144, 624, 992
SsiI CCGC 2 cut(s) 513, 752
SspMI CTAG 4 cut(s) 51, 389, 555, 984
StyD4I CCNGG 1 cut(s) 757
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 384
TaqI TCGA 4 cut(s) 43, 312, 689, 856
TaqII GACCGA 1 cut(s) 322
TasI AATT 3 cut(s) 144, 624, 992
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 2 cut(s) 105, 534
Tru1I TTAA 4 cut(s) 113, 212, 251, 875
Tru9I TTAA 4 cut(s) 113, 212, 251, 875
TscAI CASTG 5 cut(s) 69, 343, 459, 790, 828
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 4 cut(s) 522, 665, 668, 788
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 2 cut(s) 604, 820
TspRI CASTG 5 cut(s) 69, 343, 459, 790, 828
Tth111I GACNNNGTC 1 cut(s) 356
XceI RCATGY 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 4 cut(s) 51, 389, 555, 984
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.