Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Reverse (-)

12434932 .. 12435735

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1131800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAACGTGGCATCCTCTTCTCCTCCTTCTTCCTCCTCTTCTCCGCCTCGTCGGCCTTCAACATCACCAAGCTCTTAGAGAAGCAGTCGGACTTCTCCAACTTCAACAACCTCCTCTCTGAGACAAAGCTCGCTGACGAGATCAACAGACGCAGCACCATCACAATCCTCGCCGTGGACAATGGCGCTGCTGGAGGTCTCTCCGGAAAATCCTCTGACCTAACCAAGAAAATTCTGAGCGTCCATGTTGTCTTGGATTACTACGACACGGACAAGCTTAAAAAGATCTTCAAATCAAACAAGTCCGCAACTCTCACCACATTGTTTCAATCAACCGGCGAAGCTCGCAAGGAACAAGGTTTCATCACCGTTTCGGTGAAAGACAACCAAGTCTCATTTGGATCCGCAGCCAAGGGAAACAATGGCGACAATCACGTCAGCCTTGTTAAGTCGGTTATTTCCCAACCCTACAATATTTCAGTTCTCCAAGTAGGTTCCATCATCGACGTGCCTGACATCGAGAATTCCGGCTCTGCGCCCGCCCACTCACCAAAGTCTGCCAAGGCTCCCAGCCCCTCGAAGTCTAAGAAAGAAGGTGATGACGGGGCTCCCAGTCCGTCAGATGACGACGAGTCATCATCTAACAAGGCTTCAGCCCCGTCAAAGAAAAATCACGACAAAGATAGTGCTTCAGCGCCTACACCCTCGTCACCTGCTCCATCTGCTGCCTCACGCACTCGTGGGATCGTGGCCGTTGGTGCCGCGGTTTTGATCATGGTTTTGGCTTCACTTTTGGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

268

Amino Acids

27.93

Weight (kDa)

9.22

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	31 - 131	3.9e-06	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	721
AasI	GACNNNNNNGTC	2 cut(s)	389, 434
Acc36I	ACCTGC	1 cut(s)	721
AccB1I	GGYRCC	1 cut(s)	758
AccII	CGCG	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	203
AciI	CCGC	6 cut(s)	45, 306, 405, 540, 762, 764
AclWI	GGATC	3 cut(s)	396, 409, 752
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	231, 523
AcuI	CTGAAG	2 cut(s)	636, 675
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	61, 106, 292, 329
AhdI	GACNNNNNGTC	1 cut(s)	631
AjiI	CACGTC	2 cut(s)	436, 508
AluBI	AGCT	5 cut(s)	73, 130, 277, 344, 800
AluI	AGCT	5 cut(s)	73, 130, 277, 344, 800
Alw26I	GTCTC	3 cut(s)	116, 203, 397
AlwI	GGATC	3 cut(s)	396, 409, 752
Aor13HI	TCCGGA	1 cut(s)	203
AoxI	GGCC	2 cut(s)	54, 750
ApeKI	GCWGC	5 cut(s)	153, 188, 407, 725, 797
ApoI	RAATTY	2 cut(s)	231, 523
AspLEI	GCGC	3 cut(s)	188, 538, 697
AsuHPI	GGTGA	7 cut(s)	58, 307, 358, 388, 540, 608, 702
BamHI	GGATCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	610
BauI	CACGAG	1 cut(s)	738
BbvI	GCAGC	4 cut(s)	165, 175, 419, 712
BccI	CCATC	3 cut(s)	167, 506, 727
BceAI	ACGGC	2 cut(s)	158, 737
BclI	TGATCA	1 cut(s)	771
BcoDI	GTCTC	3 cut(s)	116, 203, 397
BfoI	RGCGCY	2 cut(s)	189, 698
BfuAI	ACCTGC	1 cut(s)	721
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	6 cut(s)	154, 189, 408, 726, 762, 798
BlsI	GCNGC	6 cut(s)	155, 190, 409, 727, 763, 799
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmgBI	CACGTC	2 cut(s)	436, 508
BmiI	GGNNCC	5 cut(s)	403, 496, 567, 609, 760
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	4 cut(s)	174, 411, 561, 762
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	174, 411, 561, 762
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	111, 227
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	3 cut(s)	13, 26, 104
BseXI	GCAGC	4 cut(s)	165, 175, 419, 712
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	764
BshFI	GGCC	2 cut(s)	56, 752
BshNI	GGYRCC	1 cut(s)	758
BsiSI	CCGG	3 cut(s)	204, 336, 528
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	116, 203, 397
BsnI	GGCC	2 cut(s)	56, 752
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp13I	TCCGGA	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	141, 285, 401, 744, 771
BspACI	CCGC	6 cut(s)	45, 306, 405, 540, 762, 764
BspANI	GGCC	2 cut(s)	56, 752
BspCNI	CTCAG	2 cut(s)	112, 228
BspEI	TCCGGA	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	764
BspLI	GGNNCC	5 cut(s)	403, 496, 567, 609, 760
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	3 cut(s)	396, 409, 752
BspT107I	GGYRCC	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	174, 411, 561, 762
BssMI	GATC	5 cut(s)	141, 285, 401, 744, 771
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	2 cut(s)	411, 561
Bst2BI	CACGAG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	23, 44
BstC8I	GCNNGC	3 cut(s)	132, 346, 540
BstDEI	CTNAG	4 cut(s)	76, 120, 236, 585
BstDSI	CCRYGG	2 cut(s)	174, 762
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	764
BstH2I	RGCGCY	2 cut(s)	189, 698
BstHHI	GCGC	3 cut(s)	188, 538, 697
BstKTI	GATC	5 cut(s)	144, 288, 404, 747, 774
BstMAI	GTCTC	3 cut(s)	116, 203, 397
BstMBI	GATC	5 cut(s)	141, 285, 401, 744, 771
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 345, 722, 758
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	4 cut(s)	165, 175, 419, 712
BstX2I	RGATCY	2 cut(s)	285, 401
BstYI	RGATCY	2 cut(s)	285, 401
BsuRI	GGCC	2 cut(s)	56, 752
BtgI	CCRYGG	2 cut(s)	174, 762
BtrI	CACGTC	2 cut(s)	436, 508
BtsCI	GGATG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	132, 346, 540
CfoI	GCGC	3 cut(s)	188, 538, 697
Cfr10I	RCCGGY	1 cut(s)	335
Cfr42I	CCGCGG	1 cut(s)	765
CseI	GACGC	2 cut(s)	159, 229
CviAII	CATG	2 cut(s)	245, 775
DdeI	CTNAG	4 cut(s)	76, 120, 236, 585
DpnI	GATC	5 cut(s)	143, 287, 403, 746, 773
DpnII	GATC	5 cut(s)	141, 285, 401, 744, 771
DrdI	GACNNNNNNGTC	2 cut(s)	389, 434
DriI	GACNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	2 cut(s)	389, 434
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	23, 44
Eam1105I	GACNNNNNGTC	1 cut(s)	631
EarI	CTCTTC	2 cut(s)	23, 44
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	411, 561
Eco24I	GRGCYC	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	636, 675
EcoRI	GAATTC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	411, 561
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	2 cut(s)	411, 561
FaeI	CATG	2 cut(s)	248, 778
FaiI	YATR	2 cut(s)	246, 776
FatI	CATG	2 cut(s)	244, 774
FauI	CCCGC	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	6 cut(s)	154, 189, 408, 726, 762, 798
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	6 cut(s)	154, 189, 408, 726, 762, 798
GlaI	GCGC	3 cut(s)	187, 537, 696
GluI	GCNGC	6 cut(s)	154, 189, 408, 726, 762, 798
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	2 cut(s)	189, 698
HaeIII	GGCC	2 cut(s)	56, 752
HapII	CCGG	3 cut(s)	204, 336, 528
HgaI	GACGC	2 cut(s)	159, 229
HhaI	GCGC	3 cut(s)	188, 538, 697
Hin1II	CATG	2 cut(s)	248, 778
Hin6I	GCGC	3 cut(s)	186, 536, 695
HinP1I	GCGC	3 cut(s)	186, 536, 695
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	632
HpaII	CCGG	3 cut(s)	204, 336, 528
HphI	GGTGA	7 cut(s)	58, 307, 358, 388, 540, 608, 702
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	5 cut(s)	91, 121, 217, 237, 622
Hpy188III	TCNNGA	3 cut(s)	204, 520, 674
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	55, 509, 632
HpyAV	CCTTC	3 cut(s)	37, 67, 587
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	3 cut(s)	7, 435, 507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 345, 722, 758
HpyF3I	CTNAG	4 cut(s)	76, 120, 236, 585
HpySE526I	ACGT	3 cut(s)	7, 435, 507
Hsp92II	CATG	2 cut(s)	248, 778
HspAI	GCGC	3 cut(s)	186, 536, 695
Kpn2I	TCCGGA	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	771
KspI	CCGCGG	1 cut(s)	765
Kzo9I	GATC	5 cut(s)	141, 285, 401, 744, 771
LmnI	GCTCC	3 cut(s)	571, 613, 721
LpnPI	CCDG	8 cut(s)	177, 217, 349, 525, 541, 583, 625, 726
Lsp1109I	GCAGC	4 cut(s)	165, 175, 419, 712
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	3 cut(s)	7, 435, 507
MaeIII	GTNAC	1 cut(s)	708
MalI	GATC	5 cut(s)	143, 287, 403, 746, 773
MboI	GATC	5 cut(s)	141, 285, 401, 744, 771
MboII	GAAGA	4 cut(s)	10, 22, 31, 280
MflI	RGATCY	2 cut(s)	285, 401
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	2 cut(s)	231, 523
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	2 cut(s)	69, 123
MroI	TCCGGA	1 cut(s)	203
MseI	TTAA	3 cut(s)	279, 447, 802
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	3 cut(s)	204, 336, 528
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	4 cut(s)	53, 345, 722, 758
NdeII	GATC	5 cut(s)	141, 285, 401, 744, 771
NlaIII	CATG	2 cut(s)	248, 778
NlaIV	GGNNCC	5 cut(s)	403, 496, 567, 609, 760
NmuCI	GTSAC	1 cut(s)	708
PaqCI	CACCTGC	1 cut(s)	721
PkrI	GCNGC	6 cut(s)	155, 190, 409, 727, 763, 799
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PspFI	CCCAGC	1 cut(s)	569
PspN4I	GGNNCC	5 cut(s)	403, 496, 567, 609, 760
PsuI	RGATCY	2 cut(s)	285, 401
RseI	CAYNNNNRTG	1 cut(s)	506
SacII	CCGCGG	1 cut(s)	765
SaqAI	TTAA	3 cut(s)	279, 447, 802
SatI	GCNGC	6 cut(s)	154, 189, 408, 726, 762, 798
Sau3AI	GATC	5 cut(s)	141, 285, 401, 744, 771
SchI	GAGTC	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	21
Sfr303I	CCGCGG	1 cut(s)	765
SgrBI	CCGCGG	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	231, 523
SsiI	CCGC	6 cut(s)	45, 306, 405, 540, 762, 764
SspI	AATATT	1 cut(s)	475
StyI	CCWWGG	2 cut(s)	411, 561
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	3 cut(s)	10, 438, 510
TaqI	TCGA	3 cut(s)	504, 519, 578
TasI	AATT	2 cut(s)	231, 523
TauI	GCSGC	1 cut(s)	764
Tru1I	TTAA	3 cut(s)	279, 447, 802
Tru9I	TTAA	3 cut(s)	279, 447, 802
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	5 cut(s)	153, 188, 407, 725, 797
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	2 cut(s)	17, 352
TspGWI	ACGGA	2 cut(s)	284, 606
XapI	RAATTY	2 cut(s)	231, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.