Rroxscaffold_7G00156990

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001500
Physical Location & Seq
Forward (+)
853380 .. 854192
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156990.1

Sequence Viewer

Length: 813 bp
ATGGACAGGAAAGCCTCTTCCATCATCTTCCTCGCTTTCTGTTTGGTCGCATCGGCCTCGGCCTTCGACATCCTGAAGCTCCTCCAGAAGGACTCTGAGCTGAGCGAGTTCAGCAAGCTCCTCAAGGAAACCAAACTCGCCGATCAAATCAACGAACGCAAAAGCATCACAGTCCTCGCAGTTGGCAATGGTGGTGTCTCCGCCCTCTCCAATGTGTCCCCCGATGAGGTCAAGATGCTCTTGAGCGCCCACGTGGTGCTCGACTACTTCGATGAGCAGAAGCTAAAAGGAACGGTCAAAAAAGAGCCCACAACCGTGACCACAATGCTCCAAGCCACAGGCAAGGCTCAGCACCAACAGGGATTCATTAAAGTCGGCCTCGTCAAAGGAGAGATCGCTTTTGGGTCAGCAGTCAAGGGTGCTACCCTGGATTCCAAGCTTATTAAGTCTGTCACTTCTCAGCCTTTTGACATCTCTGTGCTTAAAGTCAGTTCTCTTATTGAGATTCCTGACCTTGGTTTTGCAAGCGCCCCCAAGAAGGCTCCATCACCATCTGAAGATGATGACACTGCTCCGGCACCATCTGAAGATGATGACACTGCTGCTCCGGCACCATCTGAAGATGACGAAACAGACTTCTCATCGCCACCAGAGCCCGAAGACTCACCAACAGAAGCACCAGAGAATGCACCAAAGAAATCACCAGAGAAAGAGAAACCATCTGCTACTGCTCCTGCTCCCTCGGCTGCTTCGCGTGTCGAGATGGCTCTTGGTGTTGGGCTCGTAATGGGTTTGGCTTCACTTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

270

Amino Acids

28.32

Weight (kDa)

4.75

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 33 - 119 3.3e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 577, 610
AccII CGCG 1 cut(s) 754
AciI CCGC 1 cut(s) 201
AcuI CTGAAG 4 cut(s) 95, 576, 606, 639
AcvI CACGTG 1 cut(s) 253
AdeI CACNNNGTG 1 cut(s) 256
AfiI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 5 cut(s) 79, 100, 118, 283, 439
AluI AGCT 5 cut(s) 79, 100, 118, 283, 439
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 3 cut(s) 54, 60, 376
ApeKI GCWGC 2 cut(s) 602, 746
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AspLEI GCGC 2 cut(s) 248, 530
AsuHPI GGTGA 3 cut(s) 540, 657, 693
BanI GGYRCC 2 cut(s) 577, 610
BanII GRGCYC 3 cut(s) 309, 657, 783
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 589, 733
BccI CCATC 7 cut(s) 29, 553, 559, 589, 622, 727, 757
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 202
BfoI RGCGCY 2 cut(s) 249, 531
BisI GCNGC 2 cut(s) 603, 747
BlpI GCTNAGC 2 cut(s) 101, 348
BlsI GCNGC 2 cut(s) 604, 748
Bme1390I CCNGG 1 cut(s) 428
BmiI GGNNCC 3 cut(s) 543, 579, 612
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 3 cut(s) 59, 174, 225
BpiI GAAGAC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 68
Bpu1102I GCTNAGC 2 cut(s) 101, 348
BpuEI CTTGAG 2 cut(s) 107, 262
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 57, 426, 514, 741
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 4 cut(s) 57, 426, 514, 741
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 4 cut(s) 87, 92, 362, 473
BseRI GAGGAG 2 cut(s) 71, 110
BseXI GCAGC 2 cut(s) 589, 733
Bsh1236I CGCG 1 cut(s) 754
BshFI GGCC 3 cut(s) 56, 62, 378
BshNI GGYRCC 2 cut(s) 577, 610
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 2 cut(s) 575, 608
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 3 cut(s) 56, 62, 378
Bsp1286I GDGCHC 4 cut(s) 261, 309, 657, 783
Bsp143I GATC 2 cut(s) 142, 393
Bsp1720I GCTNAGC 2 cut(s) 101, 348
BspACI CCGC 1 cut(s) 201
BspANI GGCC 3 cut(s) 56, 62, 378
BspCNI CTCAG 4 cut(s) 88, 93, 361, 472
BspFNI CGCG 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 543, 579, 612
BspT107I GGYRCC 2 cut(s) 577, 610
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 4 cut(s) 57, 426, 514, 741
BssMI GATC 2 cut(s) 142, 393
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 172, 295, 316
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 116, 526
BstDEI CTNAG 4 cut(s) 96, 101, 348, 459
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 754
BstH2I RGCGCY 2 cut(s) 249, 531
BstHHI GCGC 2 cut(s) 248, 530
BstKTI GATC 2 cut(s) 145, 396
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 142, 393
BstMWI GCNNNNNNNGC 4 cut(s) 111, 608, 652, 743
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstUI CGCG 1 cut(s) 754
BstV1I GCAGC 2 cut(s) 589, 733
BstV2I GAAGAC 1 cut(s) 666
BsuRI GGCC 3 cut(s) 56, 62, 378
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 69
BtsI GCAGTG 2 cut(s) 567, 597
BtsIMutI CAGTG 2 cut(s) 567, 597
Cac8I GCNNGC 2 cut(s) 116, 526
CfoI GCGC 2 cut(s) 248, 530
DdeI CTNAG 4 cut(s) 96, 101, 348, 459
DpnI GATC 2 cut(s) 144, 395
DpnII GATC 2 cut(s) 142, 393
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 3 cut(s) 309, 657, 783
Eco57I CTGAAG 4 cut(s) 95, 576, 606, 639
Eco72I CACGTG 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 3 cut(s) 309, 657, 783
ErhI CCWWGG 1 cut(s) 514
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 603, 747
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 3 cut(s) 309, 657, 783
Fsp4HI GCNGC 2 cut(s) 603, 747
GlaI GCGC 2 cut(s) 247, 529
GluI GCNGC 2 cut(s) 603, 747
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 2 cut(s) 249, 531
HaeIII GGCC 3 cut(s) 56, 62, 378
HapII CCGG 2 cut(s) 575, 608
HhaI GCGC 2 cut(s) 248, 530
Hin6I GCGC 2 cut(s) 246, 528
HinP1I GCGC 2 cut(s) 246, 528
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 5 cut(s) 92, 363, 431, 505, 662
HpaII CCGG 2 cut(s) 575, 608
HphI GGTGA 3 cut(s) 540, 657, 693
Hpy188I TCNGA 4 cut(s) 97, 556, 586, 619
Hpy188III TCNNGA 6 cut(s) 73, 85, 232, 241, 509, 760
HpyAV CCTTC 3 cut(s) 73, 82, 532
HpyCH4III ACNGT 3 cut(s) 172, 295, 316
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 524, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 608, 652, 743
HpyF3I CTNAG 4 cut(s) 96, 101, 348, 459
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 2 cut(s) 246, 528
Kzo9I GATC 2 cut(s) 142, 393
LmnI GCTCC 8 cut(s) 84, 123, 333, 547, 577, 610, 736, 742
Lsp1109I GCAGC 2 cut(s) 589, 733
LweI GCATC 3 cut(s) 59, 174, 225
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 316, 451
MalI GATC 2 cut(s) 144, 395
MboI GATC 2 cut(s) 142, 393
MboII GAAGA 6 cut(s) 9, 19, 569, 599, 632, 671
MhlI GDGCHC 4 cut(s) 261, 309, 657, 783
MlyI GAGTC 2 cut(s) 86, 656
MseI TTAA 4 cut(s) 369, 444, 483, 811
MslI CAYNNNNRTG 2 cut(s) 314, 476
MspI CCGG 2 cut(s) 575, 608
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 754
MwoI GCNNNNNNNGC 4 cut(s) 111, 608, 652, 743
NdeII GATC 2 cut(s) 142, 393
NlaIV GGNNCC 3 cut(s) 543, 579, 612
NmeAIII GCCGAG 2 cut(s) 38, 722
NmuCI GTSAC 2 cut(s) 316, 451
OliI CACNNNNGTG 1 cut(s) 314
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 267
PctI GAATGC 1 cut(s) 691
PfeI GAWTC 3 cut(s) 363, 431, 505
PkrI GCNGC 2 cut(s) 604, 748
PleI GAGTC 2 cut(s) 86, 656
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 2 cut(s) 86, 656
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 543, 579, 612
RseI CAYNNNNRTG 2 cut(s) 314, 476
SaqAI TTAA 4 cut(s) 369, 444, 483, 811
SatI GCNGC 2 cut(s) 603, 747
Sau3AI GATC 2 cut(s) 142, 393
SchI GAGTC 2 cut(s) 86, 656
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 4 cut(s) 261, 309, 657, 783
SetI ASST 8 cut(s) 81, 102, 120, 231, 255, 285, 441, 516
SfaNI GCATC 3 cut(s) 59, 174, 225
SmiMI CAYNNNNRTG 2 cut(s) 314, 476
SmlI CTYRAG 2 cut(s) 122, 241
SmoI CTYRAG 2 cut(s) 122, 241
SsiI CCGC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 172, 295, 316
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 66, 261, 270, 759
TfiI GAWTC 3 cut(s) 363, 431, 505
Tru1I TTAA 4 cut(s) 369, 444, 483, 811
Tru9I TTAA 4 cut(s) 369, 444, 483, 811
TscAI CASTG 2 cut(s) 574, 604
TseFI GTSAC 2 cut(s) 316, 451
TseI GCWGC 2 cut(s) 602, 746
Tsp45I GTSAC 2 cut(s) 316, 451
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 2 cut(s) 574, 604
XagI CCTNNNNNAGG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.