Rorug06G0393000

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001500
Physical Location & Seq
Reverse (-)
53833140 .. 53836341
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0393000.1

Sequence Viewer

Length: 666 bp
ATGGCTTTGCCGAATCAGCAGACCGTGGAGTACCCGAGCTTCAAGCTCGTAATCGTTGGTGATGGTGGAACAGGGAAAACAACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATATGAACCTACTATTGGTGTTGAGGTCCATCCATTGGACTTTTTCACCAACTGTGGAAAAATTCGTTTCTACTGCTGGGATACTGCTGGGCAAGAGAAATTTGGTGGTCTTAGAGATGGATACTATATCCATGGGCAATGTGCAATTATCATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTTCCAACATGGCACAGGGATCTTTGCAGGGTCTGTGAAAACATACCAATTGTGCTTTGTGGAAACAAAGTTGATGTGAAGAACAGGCAGGTCAAGGCCAAGCAGGTCACTTTCCACAGGAAGAAGAATCTGCAGTACTACGAAATATCAGCAAAGAGCAATTATAACTTTGAGAAGCCTTTTCTATACCTTGCCAGGAAGCTTGCAGGGGATGCTAATCTGCATTTTGTCGAATCCCCTGCTCTGGCTCCTCCAGAGGTTCACATAGATCTGGCTGCACAGCAGCAGCACGAGGCTGAGCTTGCTCAAGCTGCTAGTCAGCCCCTACCCGATGATGACGATGATGCATTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

6.45

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 138 9.2e-11 ADP-ribosylation factor family
Ras PF00071 15 - 171 1.2e-47 Ras family
Roc PF08477 15 - 128 2.9e-30 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
Acc36I ACCTGC 2 cut(s) 388, 403
AccB7I CCANNNNNTGG 1 cut(s) 157
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 3 cut(s) 110, 183, 221
AfaI GTAC 2 cut(s) 32, 446
AfiI CCNNNNNNNGG 3 cut(s) 137, 157, 553
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 5 cut(s) 39, 46, 511, 610, 620
AluI AGCT 5 cut(s) 39, 46, 511, 610, 620
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 584, 592, 595, 620
ApoI RAATTY 3 cut(s) 110, 183, 221
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 71, 119, 160
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BauI CACGAG 1 cut(s) 599
BbvI GCAGC 4 cut(s) 571, 604, 607, 607
BccI CCATC 3 cut(s) 56, 159, 233
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 2 cut(s) 196, 236
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 1 cut(s) 440
BfuAI ACCTGC 2 cut(s) 388, 403
BfuI GTATCC 2 cut(s) 196, 236
BglII AGATCT 1 cut(s) 577
BisI GCNGC 4 cut(s) 585, 593, 596, 621
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 4 cut(s) 586, 594, 597, 622
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 511, 643
BpmI CTGGAG 1 cut(s) 546
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 600
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 24, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 157, 553
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 24, 253
BseGI GGATG 2 cut(s) 151, 526
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 3 cut(s) 137, 157, 553
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 4 cut(s) 571, 604, 607, 607
BseYI CCCAGC 2 cut(s) 198, 209
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 34
BslI CCNNNNNNNGG 3 cut(s) 137, 157, 553
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 2 cut(s) 328, 577
Bsp1720I GCTNAGC 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 253
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 444
BspMI ACCTGC 2 cut(s) 388, 403
BspPI GGATC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 24, 253
BssMI GATC 2 cut(s) 328, 577
BssSI CACGAG 1 cut(s) 599
BssT1I CCWWGG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 25, 176
Bst6I CTCTTC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 513, 612
BstDEI CTNAG 2 cut(s) 233, 606
BstDSI CCRYGG 2 cut(s) 24, 253
BstF5I GGATG 2 cut(s) 151, 526
BstKTI GATC 2 cut(s) 331, 580
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 328, 577
BstMWI GCNNNNNNNGC 4 cut(s) 16, 521, 611, 620
BstNI CCWGG 1 cut(s) 505
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 440
BstV1I GCAGC 4 cut(s) 571, 604, 607, 607
BstX2I RGATCY 2 cut(s) 328, 577
BstYI RGATCY 2 cut(s) 328, 577
BsuI GTATCC 2 cut(s) 196, 236
BsuRI GGCC 1 cut(s) 407
BtgI CCRYGG 2 cut(s) 24, 253
BtsCI GGATG 2 cut(s) 151, 526
BveI ACCTGC 2 cut(s) 388, 403
Cac8I GCNNGC 2 cut(s) 513, 612
CaiI CAGNNNCTG 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 2 cut(s) 31, 445
CviAII CATG 3 cut(s) 254, 274, 318
CviQI GTAC 2 cut(s) 31, 445
DdeI CTNAG 2 cut(s) 233, 606
DpnI GATC 2 cut(s) 330, 579
DpnII GATC 2 cut(s) 328, 577
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 3 cut(s) 257, 277, 321
FatI CATG 3 cut(s) 253, 273, 317
Fnu4HI GCNGC 4 cut(s) 585, 593, 596, 621
FokI GGATG 2 cut(s) 138, 533
Fsp4HI GCNGC 4 cut(s) 585, 593, 596, 621
FspBI CTAG 1 cut(s) 624
GluI GCNGC 4 cut(s) 585, 593, 596, 621
GsaI CCCAGC 2 cut(s) 202, 213
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 1 cut(s) 407
Hin1II CATG 3 cut(s) 257, 277, 321
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 3 cut(s) 13, 436, 542
HphI GGTGA 3 cut(s) 71, 119, 160
Hpy166II GTNNAC 1 cut(s) 571
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 1 cut(s) 571
HpyCH4III ACNGT 2 cut(s) 25, 176
HpyCH4V TGCA 7 cut(s) 266, 336, 442, 515, 532, 587, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 521, 611, 620
HpyF3I CTNAG 2 cut(s) 233, 606
Hsp92II CATG 3 cut(s) 257, 277, 321
Kzo9I GATC 2 cut(s) 328, 577
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 4 cut(s) 571, 604, 607, 607
LweI GCATC 2 cut(s) 511, 643
MaeI CTAG 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 283, 415
MalI GATC 2 cut(s) 330, 579
MboI GATC 2 cut(s) 328, 577
MboII GAAGA 5 cut(s) 103, 130, 400, 442, 445
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 2 cut(s) 328, 577
MluCI AATT 6 cut(s) 110, 183, 221, 267, 357, 469
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 4 cut(s) 139, 559, 570, 595
Mph1103I ATGCAT 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 4 cut(s) 16, 521, 611, 620
NcoI CCATGG 1 cut(s) 253
NdeII GATC 2 cut(s) 328, 577
NlaIII CATG 3 cut(s) 257, 277, 321
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 658
PfeI GAWTC 3 cut(s) 13, 436, 542
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 4 cut(s) 586, 594, 597, 622
PsiI TTATAA 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 2 cut(s) 198, 209
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 342
PsuI RGATCY 2 cut(s) 328, 577
RsaI GTAC 2 cut(s) 32, 446
RsaNI GTAC 2 cut(s) 31, 445
SatI GCNGC 4 cut(s) 585, 593, 596, 621
Sau3AI GATC 2 cut(s) 328, 577
Sau96I GGNCC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 2 cut(s) 511, 643
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
Sse9I AATT 6 cut(s) 110, 183, 221, 267, 357, 469
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 25, 176
TaqI TCGA 1 cut(s) 540
TasI AATT 6 cut(s) 110, 183, 221, 267, 357, 469
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 3 cut(s) 13, 436, 542
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 4 cut(s) 584, 592, 595, 620
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 3 cut(s) 110, 183, 221
XspI CTAG 1 cut(s) 624
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.