Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Reverse (-)

68153235 .. 68157569

Gene Structure 4335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG527200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGACAGGAAAGCCTCTTCCATCATCTTCCTCGCTTTCTGTTTGGTCGCATCGGCCTCGGCCTTCGACATCCTGAAGCTCCTCGAGAAGGACTCCGAGCTGAGCGAGTTCAGCAAGCTCCTCAAGGAAACCAAACTCGCCGATCAAATCAACGAACGCAAAAGCATCACAGTCCTCGCAGTTGGCAATGGTGGTGTCTCCGCCCTCTCCAATGTGTCCCCCGATGAGGTCAAGATGCTCTTGAGCGCCCACGTGGTGCTCGACTACTTCGATGAGGAGAAGCTAAAAGGAACGGTCAAAAAAGAGCCCACAACCGTGACCACAATGCTCCAAGCCACAGGCATGGCTGAGCACCAACAGGGATTCATTAAAGTCGGCCTTGTCAAAGGAGAGATCGCTTTTGGGTCAGCAGTCAAGGGTGCTAACCTGGATTCCAAGCTTATTAAGTATGTCACTTCTCAGCCTTCTAACATCTCTGTGCTTCAAGTCAGTTCTCTTATTGAGATTCCTGACCTTGGTTCTGCAAGCGCCCCCAAGAAGGCTCCATCACCATCTGAAGATGACAAAACAGACTTCTCATCTCCACCAGAGCCCGAAGGCTCACCAACAGAAGCACCAGAGAAGGCACCAGAGAAATCACCAAAGAAAGCACCAGAGAAAGAGAAACCATCTGCTACTGCTACTGCTCCTGCTCCCTCGGCTGCTTCACGTGTCGAGATGGCTCTTGGTGCCGGGCTCGTAATGGGTTTGGCTTCACTTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

255

Amino Acids

26.75

Weight (kDa)

5.43

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	33 - 112	3.4e-06	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	625, 728
AciI	CCGC	1 cut(s)	201
AcuI	CTGAAG	2 cut(s)	95, 576
AcvI	CACGTG	2 cut(s)	253, 710
AdeI	CACNNNGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	426
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	5 cut(s)	79, 100, 118, 283, 439
AluI	AGCT	5 cut(s)	79, 100, 118, 283, 439
Alw21I	GWGCWC	2 cut(s)	261, 354
Alw26I	GTCTC	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	54, 60, 376
ApeKI	GCWGC	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	248, 530
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	3 cut(s)	540, 594, 630
AvaI	CYCGRG	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	625, 728
BanII	GRGCYC	3 cut(s)	309, 594, 738
BbrPI	CACGTG	2 cut(s)	253, 710
Bbv12I	GWGCWC	2 cut(s)	261, 354
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	5 cut(s)	29, 553, 559, 676, 712
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BciT130I	CCWGG	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	202
BfoI	RGCGCY	2 cut(s)	249, 531
BisI	GCNGC	1 cut(s)	702
BlpI	GCTNAGC	2 cut(s)	101, 348
BlsI	GCNGC	1 cut(s)	703
Bme1390I	CCNGG	2 cut(s)	428, 733
BmeT110I	CYCGRG	1 cut(s)	83
BmiI	GGNNCC	3 cut(s)	543, 627, 730
BmrFI	CCNGG	2 cut(s)	428, 733
BmsI	GCATC	3 cut(s)	59, 174, 225
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu1102I	GCTNAGC	2 cut(s)	101, 348
BpuEI	CTTGAG	2 cut(s)	107, 262
BpuMI	CCSGG	1 cut(s)	733
BsaAI	YACGTR	2 cut(s)	253, 710
BsaJI	CCNNGG	3 cut(s)	57, 514, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	3 cut(s)	57, 514, 696
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	92, 339, 473
BseRI	GAGGAG	3 cut(s)	71, 110, 290
BseXI	GCAGC	1 cut(s)	688
BshFI	GGCC	3 cut(s)	56, 62, 378
BshNI	GGYRCC	2 cut(s)	625, 728
BsiHKAI	GWGCWC	2 cut(s)	261, 354
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	732
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	56, 62, 378
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	5 cut(s)	261, 309, 354, 594, 738
Bsp143I	GATC	2 cut(s)	142, 393
Bsp1720I	GCTNAGC	2 cut(s)	101, 348
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	56, 62, 378
BspCNI	CTCAG	3 cut(s)	93, 340, 472
BspLI	GGNNCC	3 cut(s)	543, 627, 730
BspT107I	GGYRCC	2 cut(s)	625, 728
BsrDI	GCAATG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	57, 514, 696
BssMI	GATC	2 cut(s)	142, 393
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	172, 295, 316
Bst6I	CTCTTC	1 cut(s)	22
BstBAI	YACGTR	2 cut(s)	253, 710
BstC8I	GCNNGC	2 cut(s)	116, 526
BstDEI	CTNAG	3 cut(s)	101, 348, 459
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	69
BstH2I	RGCGCY	2 cut(s)	249, 531
BstHHI	GCGC	2 cut(s)	248, 530
BstKTI	GATC	2 cut(s)	145, 396
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	142, 393
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 698, 728
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	426, 731
BstV1I	GCAGC	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	56, 62, 378
BtsCI	GGATG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	116, 526
CfoI	GCGC	2 cut(s)	248, 530
CviAII	CATG	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	101, 348, 459
DpnI	GATC	2 cut(s)	144, 395
DpnII	GATC	2 cut(s)	142, 393
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	3 cut(s)	309, 594, 738
Eco57I	CTGAAG	2 cut(s)	95, 576
Eco72I	CACGTG	2 cut(s)	253, 710
Eco88I	CYCGRG	1 cut(s)	83
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	3 cut(s)	309, 594, 738
ErhI	CCWWGG	1 cut(s)	514
FaeI	CATG	1 cut(s)	346
FaiI	YATR	2 cut(s)	344, 450
FalI	AAGNNNNNCTT	4 cut(s)	224, 256, 363, 395
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	3 cut(s)	309, 594, 738
Fsp4HI	GCNGC	1 cut(s)	702
GlaI	GCGC	2 cut(s)	247, 529
GluI	GCNGC	1 cut(s)	702
HaeII	RGCGCY	2 cut(s)	249, 531
HaeIII	GGCC	3 cut(s)	56, 62, 378
HapII	CCGG	1 cut(s)	732
HhaI	GCGC	2 cut(s)	248, 530
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	2 cut(s)	246, 528
HinP1I	GCGC	2 cut(s)	246, 528
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	4 cut(s)	92, 363, 431, 505
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	3 cut(s)	540, 594, 630
Hpy188I	TCNGA	2 cut(s)	97, 556
Hpy188III	TCNNGA	6 cut(s)	73, 85, 232, 241, 509, 715
HpyAV	CCTTC	6 cut(s)	73, 82, 474, 532, 590, 616
HpyCH4III	ACNGT	3 cut(s)	172, 295, 316
HpyCH4IV	ACGT	2 cut(s)	252, 709
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 698, 728
HpyF3I	CTNAG	3 cut(s)	101, 348, 459
HpySE526I	ACGT	2 cut(s)	252, 709
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	2 cut(s)	246, 528
Kzo9I	GATC	2 cut(s)	142, 393
LmnI	GCTCC	6 cut(s)	84, 123, 333, 547, 691, 697
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	3 cut(s)	59, 174, 225
MaeII	ACGT	2 cut(s)	252, 709
MaeIII	GTNAC	2 cut(s)	316, 451
MalI	GATC	2 cut(s)	144, 395
MboI	GATC	2 cut(s)	142, 393
MboII	GAAGA	3 cut(s)	9, 19, 569
MhlI	GDGCHC	5 cut(s)	261, 309, 354, 594, 738
MlyI	GAGTC	1 cut(s)	86
MseI	TTAA	3 cut(s)	369, 444, 766
MslI	CAYNNNNRTG	3 cut(s)	314, 341, 476
MspI	CCGG	1 cut(s)	732
MspR9I	CCNGG	2 cut(s)	428, 733
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	111, 698, 728
NciI	CCSGG	1 cut(s)	733
NdeII	GATC	2 cut(s)	142, 393
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	543, 627, 730
NmeAIII	GCCGAG	2 cut(s)	38, 677
NmuCI	GTSAC	2 cut(s)	316, 451
OliI	CACNNNNGTG	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 267
PfeI	GAWTC	3 cut(s)	363, 431, 505
PkrI	GCNGC	1 cut(s)	703
PleI	GAGTC	1 cut(s)	86
PmaCI	CACGTG	2 cut(s)	253, 710
PmlI	CACGTG	2 cut(s)	253, 710
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	2 cut(s)	253, 710
Psp6I	CCWGG	1 cut(s)	426
PspCI	CACGTG	2 cut(s)	253, 710
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	543, 627, 730
RseI	CAYNNNNRTG	3 cut(s)	314, 341, 476
SaqAI	TTAA	3 cut(s)	369, 444, 766
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	2 cut(s)	142, 393
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	428, 733
SduI	GDGCHC	5 cut(s)	261, 309, 354, 594, 738
SfaNI	GCATC	3 cut(s)	59, 174, 225
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	314, 341, 476
SmlI	CTYRAG	3 cut(s)	83, 122, 241
SmoI	CTYRAG	3 cut(s)	83, 122, 241
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	426, 731
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	3 cut(s)	172, 295, 316
TaiI	ACGT	2 cut(s)	255, 712
TaqI	TCGA	5 cut(s)	66, 84, 261, 270, 714
TfiI	GAWTC	3 cut(s)	363, 431, 505
Tru1I	TTAA	3 cut(s)	369, 444, 766
Tru9I	TTAA	3 cut(s)	369, 444, 766
TseFI	GTSAC	2 cut(s)	316, 451
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	2 cut(s)	316, 451
TspDTI	ATGAA	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.