Rw6G044390

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001500
Physical Location & Seq
Reverse (-)
67542671 .. 67543686
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044390.1

Sequence Viewer

Length: 861 bp
ATGGAGACGAATAAAGCTAAAGCCTCTGTCTCCTTCTTCCTTCTCATGATGTTGTTAATAAGCTCTTGTTCAGCTTTCAACATCACCAAGCTCCTCGAAAAGGAAGACGATTTCAGCAACTTCAACCAGCAGCTCTCCCAGACCAAAATCGCCGACCAGATCAACAAGCGAAGCACCATCACCGTCCTCGCCGTGGACAACAGCGCAATAGGCGGTCTAGGTGACGACAGCTCCGTGACGAAGGCGATCATGAGCGTCCACGTCATCCTCGACTACTACGACAAGGAGAAGCTGACCAAGCATGCCAAGACCAACAAGAGCGCCACGCTGACGACGCTGTACCAGACCTCCGGGTTGGCTAAGAACCAACAGGGCTTCCTCCGAGTAGCAGCCGACGACGGTGAGATTACTTTCGGGTCGGCAAGCAAGGGTGGACAAATGAACTCCAAGCTGGTCAAGTCTGTGACAGCTCAGCCCTTCAACATTTCCGTGCTTCAGGTTAGTTCCATCATAGAGGTTCCCGACATTAATGCTATTCCTTCCCCCGAAAAGGCTCCGGCACCGAAGAGGGAAAGCCTCCGAGTTCTTCCGACGACGACGACGCTGACAGTCCCTCCGACGACGACGCTGACAGTCCCTCCGACGACACAGCCGACAGTCCCGGGGACGACTCGGACTCGGAGGCTCCCAGTCCGTCGAAGCACCATACACCACCCAAGCCTAAGGATGATACGTCAGATTCGCCATCGTCGAGTCCAGCGCCTGAGCCCGGTAAGAGTGATGCACGCGCCACCGCTGCGGAGATGGGCGTTGGGGATTGTTGCTATGGGGTTAGTTTTGGTGTTGGTTGCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

286

Amino Acids

31.4

Weight (kDa)

10.36

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 559
AccII CGCG 1 cut(s) 788
AciI CCGC 3 cut(s) 213, 794, 799
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 4 cut(s) 100, 193, 550, 769
AgsI TTSAA 3 cut(s) 79, 124, 481
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 9 cut(s) 17, 63, 74, 91, 133, 231, 292, 451, 470
AluI AGCT 9 cut(s) 17, 63, 74, 91, 133, 231, 292, 451, 470
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 763
Ama87I CYCGRG 1 cut(s) 661
ApeKI GCWGC 3 cut(s) 130, 389, 796
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 4 cut(s) 206, 323, 762, 790
AsuC2I CCSGG 4 cut(s) 352, 662, 663, 770
AsuHPI GGTGA 4 cut(s) 76, 172, 233, 413
AvaI CYCGRG 1 cut(s) 661
AxyI CCTNAGG 1 cut(s) 722
BanI GGYRCC 1 cut(s) 559
BanII GRGCYC 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 142, 401, 783
BccI CCATC 4 cut(s) 185, 515, 753, 798
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BcnI CCSGG 4 cut(s) 352, 662, 663, 770
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 2 cut(s) 324, 763
BisI GCNGC 3 cut(s) 131, 390, 797
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 3 cut(s) 132, 391, 798
Bme1390I CCNGG 4 cut(s) 352, 662, 663, 770
BmeT110I CYCGRG 1 cut(s) 661
BmgBI CACGTC 1 cut(s) 262
BmiI GGNNCC 4 cut(s) 519, 555, 561, 686
BmrFI CCNGG 4 cut(s) 352, 662, 663, 770
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 1 cut(s) 771
BmuI ACTGGG 1 cut(s) 683
BpiI GAAGAC 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 764
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 4 cut(s) 352, 662, 663, 770
BsaJI CCNNGG 3 cut(s) 192, 661, 662
BsaXI ACNNNNNCTCC 8 cut(s) 215, 245, 332, 362, 598, 622, 628, 652
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 193, 550, 769
Bse1I ACTGG 1 cut(s) 689
Bse21I CCTNAGG 1 cut(s) 722
BseDI CCNNGG 3 cut(s) 192, 661, 662
BseGI GGATG 2 cut(s) 264, 732
BseLI CCNNNNNNNGG 4 cut(s) 100, 193, 550, 769
BseMII CTCAG 2 cut(s) 485, 755
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 142, 401, 783
Bsh1236I CGCG 1 cut(s) 788
BshNI GGYRCC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 4 cut(s) 351, 557, 662, 770
BslFI GGGAC 4 cut(s) 596, 620, 644, 679
BslI CCNNNNNNNGG 4 cut(s) 100, 193, 550, 769
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 4 cut(s) 596, 620, 644, 679
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 770
Bsp143I GATC 2 cut(s) 159, 246
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 3 cut(s) 213, 794, 799
BspCNI CTCAG 2 cut(s) 484, 756
BspFNI CGCG 1 cut(s) 788
BspHI TCATGA 2 cut(s) 45, 249
BspLI GGNNCC 4 cut(s) 519, 555, 561, 686
BspT107I GGYRCC 1 cut(s) 559
BsrI ACTGG 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 192, 661, 662
BssMI GATC 2 cut(s) 159, 246
Bst4CI ACNGT 5 cut(s) 184, 401, 610, 634, 658
Bst6I CTCTTC 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 303, 424, 786
BstDEI CTNAG 4 cut(s) 360, 471, 722, 764
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 264, 732
BstFNI CGCG 1 cut(s) 788
BstH2I RGCGCY 2 cut(s) 324, 763
BstHHI GCGC 4 cut(s) 206, 323, 762, 790
BstKTI GATC 2 cut(s) 162, 249
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 159, 246
BstMWI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 796
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 350, 660, 661, 768
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 3 cut(s) 142, 401, 783
BstV2I GAAGAC 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 722
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 264, 732
Cac8I GCNNGC 3 cut(s) 303, 424, 786
CaiI CAGNNNCTG 1 cut(s) 763
CciI TCATGA 2 cut(s) 45, 249
CfoI GCGC 4 cut(s) 206, 323, 762, 790
Cfr9I CCCGGG 1 cut(s) 661
CseI GACGC 4 cut(s) 244, 343, 610, 634
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 46, 250, 302
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 4 cut(s) 360, 471, 722, 764
DpnI GATC 2 cut(s) 161, 248
DpnII GATC 2 cut(s) 159, 246
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 770
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 661
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 770
FaeI CATG 3 cut(s) 49, 253, 305
FaiI YATR 6 cut(s) 47, 251, 303, 512, 707, 827
FaqI GGGAC 4 cut(s) 596, 620, 644, 679
FatI CATG 3 cut(s) 45, 249, 301
Fnu4HI GCNGC 3 cut(s) 131, 390, 797
FokI GGATG 2 cut(s) 251, 739
FriOI GRGCYC 1 cut(s) 770
Fsp4HI GCNGC 3 cut(s) 131, 390, 797
FspBI CTAG 1 cut(s) 218
GlaI GCGC 4 cut(s) 205, 322, 761, 789
GluI GCNGC 3 cut(s) 131, 390, 797
HaeII RGCGCY 2 cut(s) 324, 763
HapII CCGG 4 cut(s) 351, 557, 662, 770
HgaI GACGC 4 cut(s) 244, 343, 610, 634
HhaI GCGC 4 cut(s) 206, 323, 762, 790
Hin1II CATG 3 cut(s) 49, 253, 305
Hin6I GCGC 4 cut(s) 204, 321, 760, 788
HinP1I GCGC 4 cut(s) 204, 321, 760, 788
HinfI GANTC 4 cut(s) 670, 676, 739, 753
HpaII CCGG 4 cut(s) 351, 557, 662, 770
HphI GGTGA 4 cut(s) 76, 172, 233, 413
Hpy166II GTNNAC 3 cut(s) 196, 259, 434
Hpy188I TCNGA 8 cut(s) 383, 581, 591, 618, 642, 675, 681, 738
Hpy188III TCNNGA 3 cut(s) 46, 250, 521
Hpy8I GTNNAC 3 cut(s) 196, 259, 434
HpyAV CCTTC 5 cut(s) 43, 50, 235, 487, 549
HpyCH4III ACNGT 5 cut(s) 184, 401, 610, 634, 658
HpyCH4IV ACGT 2 cut(s) 261, 733
HpyCH4V TGCA 1 cut(s) 784
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 796
HpyF3I CTNAG 4 cut(s) 360, 471, 722, 764
HpySE526I ACGT 2 cut(s) 261, 733
Hsp92II CATG 3 cut(s) 49, 253, 305
HspAI GCGC 4 cut(s) 204, 321, 760, 788
Kzo9I GATC 2 cut(s) 159, 246
LmnI GCTCC 4 cut(s) 96, 236, 559, 690
Lsp1109I GCAGC 3 cut(s) 142, 401, 783
LweI GCATC 1 cut(s) 771
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 261, 733
MaeIII GTNAC 3 cut(s) 221, 235, 463
MalI GATC 2 cut(s) 161, 248
MboI GATC 2 cut(s) 159, 246
MboII GAAGA 4 cut(s) 28, 116, 577, 578
MhlI GDGCHC 1 cut(s) 770
MlyI GAGTC 3 cut(s) 664, 670, 762
MmeI TCCRAC 3 cut(s) 614, 641, 665
MseI TTAA 2 cut(s) 56, 528
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 796
MspI CCGG 4 cut(s) 351, 557, 662, 770
MspR9I CCNGG 4 cut(s) 352, 662, 663, 770
MvnI CGCG 1 cut(s) 788
MwoI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 796
NciI CCSGG 4 cut(s) 352, 662, 663, 770
NdeII GATC 2 cut(s) 159, 246
NlaIII CATG 3 cut(s) 49, 253, 305
NlaIV GGNNCC 4 cut(s) 519, 555, 561, 686
NmuCI GTSAC 3 cut(s) 221, 235, 463
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PagI TCATGA 2 cut(s) 45, 249
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 267, 276, 650, 748
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 3 cut(s) 132, 391, 798
PleI GAGTC 3 cut(s) 664, 670, 761
PpsI GAGTC 3 cut(s) 664, 670, 761
PshBI ATTAAT 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 519, 555, 561, 686
PstNI CAGNNNCTG 1 cut(s) 763
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 56, 528
SatI GCNGC 3 cut(s) 131, 390, 797
Sau3AI GATC 2 cut(s) 159, 246
SchI GAGTC 3 cut(s) 664, 670, 762
ScrFI CCNGG 4 cut(s) 352, 662, 663, 770
SduI GDGCHC 1 cut(s) 770
SfaNI GCATC 1 cut(s) 771
SmaI CCCGGG 1 cut(s) 663
SmiMI CAYNNNNRTG 1 cut(s) 488
SphI GCATGC 1 cut(s) 305
SsiI CCGC 3 cut(s) 213, 794, 799
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 4 cut(s) 350, 660, 661, 768
TaaI ACNGT 5 cut(s) 184, 401, 610, 634, 658
TaiI ACGT 2 cut(s) 264, 736
TaqI TCGA 4 cut(s) 96, 270, 697, 751
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 2 cut(s) 56, 528
Tru9I TTAA 2 cut(s) 56, 528
TseFI GTSAC 3 cut(s) 221, 235, 463
TseI GCWGC 3 cut(s) 130, 389, 796
Tsp45I GTSAC 3 cut(s) 221, 235, 463
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 223, 478, 683
TspMI CCCGGG 1 cut(s) 661
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 98
XceI RCATGY 1 cut(s) 305
XmaI CCCGGG 1 cut(s) 661
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.