Rh6CG527100

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001500
Physical Location & Seq
Reverse (-)
68150977 .. 68152109
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG527100.1

Sequence Viewer

Length: 837 bp
ATGGAGACGAATAAAGCTAAAGCCTCTGTCTCCTTCTTCCTTCTCATGATGTTGTTAATAAGCTCTTGTTCGGCTTTCAACATCACCAAGCTCCTCGAAAAGGAAGACGATTTCAGCAACTTCAACCAGCAGCTCTCCCAGACCAAAATCGCCGACCAGATCAACCGCCGGGAGACCATCACCGTCCTCGCCGTGGACAACAGCGCAATAGGCGGCCTAGGTGACGACAGCTCCGTGACGAAGGCGATCATAAGCGTCCACGTAATCCTCGACTACTACGACAAGGAGAAGCTGACCAAGCATGCCAAGACCAACAAGAGCGCCATGCTGACGACGCTGTACCAGACCTCCGGGTTGGCTAAGAACCAACAGGGCTTCCTCCGAGTAGCAGCCGACGACGGTGAGATTACTTTCGGGTCGGCAAGCAAGGGTGGACAAATGAACTCCAAGCTGGTCAAGTCTGTGACAGCTCAGCCCTTCAACATTTCCGTGCTTCAGGTTAGTTCCATCATAGAGGTTCCCAACATTAATGCTAATCCTTCCCCCGAAAAGGCTCCGGCACCGAAGAGGGGGAAGCCTCCGAGTTCGTCCGACGACGACGACGCTGACAGTCCCTCCGACGACACAGCCGACAGTCCCGGGGACGACTCGGACTCGGAGGCTCCCAGTCCGTCGAAGCACCATACACCACCCAAGCCTAAGGATGATACGTCAGATTCGCCATCGTCGAGTCTAGCGCCTGCGCCCGGTAAGAGTGATGCACGCGCCGCCGCTACGGAGATGGTCGTTGGGGTTGTTGCTATGGGGTTAGTTTCGGTGTTAGTTGCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

278

Amino Acids

29.38

Weight (kDa)

5.04

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 559
AccII CGCG 1 cut(s) 765
AciI CCGC 4 cut(s) 166, 213, 768, 771
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 746
AgsI TTSAA 3 cut(s) 79, 124, 481
AluBI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
AluI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
Alw26I GTCTC 2 cut(s) 34, 167
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 130, 389
AseI ATTAAT 1 cut(s) 528
AspA2I CCTAGG 1 cut(s) 217
AspLEI GCGC 5 cut(s) 206, 323, 739, 745, 767
AsuC2I CCSGG 5 cut(s) 170, 352, 639, 640, 747
AsuHPI GGTGA 4 cut(s) 76, 172, 233, 413
AvaI CYCGRG 1 cut(s) 638
AvrII CCTAGG 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 699
BanI GGYRCC 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 142, 401
BccI CCATC 4 cut(s) 185, 515, 730, 775
BceAI ACGGC 1 cut(s) 176
BcnI CCSGG 5 cut(s) 170, 352, 639, 640, 747
BcoDI GTCTC 2 cut(s) 34, 167
BfaI CTAG 2 cut(s) 218, 734
BfoI RGCGCY 2 cut(s) 324, 740
BisI GCNGC 5 cut(s) 131, 214, 390, 768, 771
BlnI CCTAGG 1 cut(s) 217
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 5 cut(s) 132, 215, 391, 769, 772
Bme1390I CCNGG 5 cut(s) 170, 352, 639, 640, 747
BmeT110I CYCGRG 1 cut(s) 638
BmiI GGNNCC 4 cut(s) 519, 555, 561, 663
BmrFI CCNGG 5 cut(s) 170, 352, 639, 640, 747
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 748
BmuI ACTGGG 1 cut(s) 660
BpiI GAAGAC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 5 cut(s) 170, 352, 639, 640, 747
BsaAI YACGTR 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 192, 217, 638, 639
BsaXI ACNNNNNCTCC 6 cut(s) 215, 245, 332, 362, 599, 629
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 746
Bse1I ACTGG 1 cut(s) 666
Bse21I CCTNAGG 1 cut(s) 699
BseDI CCNNGG 4 cut(s) 192, 217, 638, 639
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 746
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 142, 401
Bsh1236I CGCG 1 cut(s) 765
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 5 cut(s) 169, 351, 557, 639, 747
BslFI GGGAC 3 cut(s) 597, 621, 656
BslI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 746
BsmAI GTCTC 2 cut(s) 34, 167
BsmFI GGGAC 3 cut(s) 597, 621, 656
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 638
Bsp143I GATC 2 cut(s) 159, 246
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 4 cut(s) 166, 213, 768, 771
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 765
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 519, 555, 561, 663
BspT107I GGYRCC 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 4 cut(s) 192, 217, 638, 639
BssMI GATC 2 cut(s) 159, 246
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 4 cut(s) 184, 401, 611, 635
Bst6I CTCTTC 1 cut(s) 560
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 4 cut(s) 303, 424, 741, 763
BstDEI CTNAG 3 cut(s) 360, 471, 699
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 1 cut(s) 765
BstH2I RGCGCY 2 cut(s) 324, 740
BstHHI GCGC 5 cut(s) 206, 323, 739, 745, 767
BstKTI GATC 2 cut(s) 162, 249
BstMAI GTCTC 2 cut(s) 34, 167
BstMBI GATC 2 cut(s) 159, 246
BstMWI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 767
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 5 cut(s) 168, 350, 637, 638, 745
BstUI CGCG 1 cut(s) 765
BstV1I GCAGC 2 cut(s) 142, 401
BstV2I GAAGAC 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 699
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 709
Cac8I GCNNGC 4 cut(s) 303, 424, 741, 763
CciI TCATGA 1 cut(s) 45
CfoI GCGC 5 cut(s) 206, 323, 739, 745, 767
Cfr9I CCCGGG 1 cut(s) 638
CseI GACGC 3 cut(s) 244, 343, 611
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 46, 302, 325
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 360, 471, 699
DpnI GATC 2 cut(s) 161, 248
DpnII GATC 2 cut(s) 159, 246
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 699
Eco88I CYCGRG 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 49, 305, 328
FaiI YATR 7 cut(s) 47, 251, 303, 326, 512, 684, 803
FaqI GGGAC 3 cut(s) 597, 621, 656
FatI CATG 3 cut(s) 45, 301, 324
Fnu4HI GCNGC 5 cut(s) 131, 214, 390, 768, 771
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 5 cut(s) 131, 214, 390, 768, 771
FspBI CTAG 2 cut(s) 218, 734
GlaI GCGC 5 cut(s) 205, 322, 738, 744, 766
GluI GCNGC 5 cut(s) 131, 214, 390, 768, 771
HaeII RGCGCY 2 cut(s) 324, 740
HaeIII GGCC 1 cut(s) 216
HapII CCGG 5 cut(s) 169, 351, 557, 639, 747
HgaI GACGC 3 cut(s) 244, 343, 611
HhaI GCGC 5 cut(s) 206, 323, 739, 745, 767
Hin1II CATG 3 cut(s) 49, 305, 328
Hin6I GCGC 5 cut(s) 204, 321, 737, 743, 765
HinP1I GCGC 5 cut(s) 204, 321, 737, 743, 765
HinfI GANTC 4 cut(s) 647, 653, 716, 730
HpaII CCGG 5 cut(s) 169, 351, 557, 639, 747
HphI GGTGA 4 cut(s) 76, 172, 233, 413
Hpy166II GTNNAC 3 cut(s) 196, 259, 434
Hpy188I TCNGA 7 cut(s) 383, 582, 592, 619, 652, 658, 715
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 3 cut(s) 196, 259, 434
HpyAV CCTTC 5 cut(s) 43, 50, 235, 487, 549
HpyCH4III ACNGT 4 cut(s) 184, 401, 611, 635
HpyCH4IV ACGT 2 cut(s) 261, 710
HpyCH4V TGCA 1 cut(s) 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 767
HpyF3I CTNAG 3 cut(s) 360, 471, 699
HpySE526I ACGT 2 cut(s) 261, 710
Hsp92II CATG 3 cut(s) 49, 305, 328
HspAI GCGC 5 cut(s) 204, 321, 737, 743, 765
Kzo9I GATC 2 cut(s) 159, 246
LmnI GCTCC 4 cut(s) 96, 236, 559, 667
Lsp1109I GCAGC 2 cut(s) 142, 401
LweI GCATC 1 cut(s) 748
MaeI CTAG 2 cut(s) 218, 734
MaeII ACGT 2 cut(s) 261, 710
MaeIII GTNAC 3 cut(s) 221, 235, 463
MalI GATC 2 cut(s) 161, 248
MboI GATC 2 cut(s) 159, 246
MboII GAAGA 3 cut(s) 28, 116, 577
MlyI GAGTC 3 cut(s) 641, 647, 739
MmeI TCCRAC 2 cut(s) 615, 642
MseI TTAA 2 cut(s) 56, 528
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 5 cut(s) 169, 351, 557, 639, 747
MspR9I CCNGG 5 cut(s) 170, 352, 639, 640, 747
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 767
NciI CCSGG 5 cut(s) 170, 352, 639, 640, 747
NdeII GATC 2 cut(s) 159, 246
NlaIII CATG 3 cut(s) 49, 305, 328
NlaIV GGNNCC 4 cut(s) 519, 555, 561, 663
NmuCI GTSAC 3 cut(s) 221, 235, 463
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PagI TCATGA 1 cut(s) 45
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 267, 276, 627, 725
PfeI GAWTC 1 cut(s) 716
PkrI GCNGC 5 cut(s) 132, 215, 391, 769, 772
PleI GAGTC 3 cut(s) 641, 647, 738
PpsI GAGTC 3 cut(s) 641, 647, 738
Ppu21I YACGTR 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 519, 555, 561, 663
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 56, 528
SatI GCNGC 5 cut(s) 131, 214, 390, 768, 771
Sau3AI GATC 2 cut(s) 159, 246
SchI GAGTC 3 cut(s) 641, 647, 739
ScrFI CCNGG 5 cut(s) 170, 352, 639, 640, 747
SfaNI GCATC 1 cut(s) 748
SmaI CCCGGG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 488
SphI GCATGC 1 cut(s) 305
SsiI CCGC 4 cut(s) 166, 213, 768, 771
SspMI CTAG 2 cut(s) 218, 734
StyD4I CCNGG 5 cut(s) 168, 350, 637, 638, 745
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 4 cut(s) 184, 401, 611, 635
TaiI ACGT 2 cut(s) 264, 713
TaqI TCGA 4 cut(s) 96, 270, 674, 728
TauI GCSGC 3 cut(s) 216, 770, 773
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 2 cut(s) 56, 528
Tru9I TTAA 2 cut(s) 56, 528
TseFI GTSAC 3 cut(s) 221, 235, 463
TseI GCWGC 2 cut(s) 130, 389
Tsp45I GTSAC 3 cut(s) 221, 235, 463
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 4 cut(s) 223, 478, 660, 791
TspMI CCCGGG 1 cut(s) 638
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 98
XceI RCATGY 1 cut(s) 305
XmaI CCCGGG 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 217
XspI CTAG 2 cut(s) 218, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.