Rh6DG512500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001500
Physical Location & Seq
Reverse (-)
66538514 .. 66539956
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG512500.1

Sequence Viewer

Length: 879 bp
ATGGAGACGAATAAAGCTAAAGCCTCTGTCTCCTTCTTCCTTCTCATGATGTTGTTAATAAGCTCTTGTTCGGCTTTCAACATCACCAAGCTCCTCGAAAACGAAGACGATTTCAGCAACTTCAACCAGCAGCTCTCCCAGACCAAAATCGCCGACCAGATCAACAAGCGGAGCACCATCACCGTCCTCGCCGTGGACAACAGCGCAATAGGCGGCCTAGGTGACGACAGCTCCGTAACGAAGGCGATCATGAGCGTCCACGTCATCCTCGACTACTACGACAAGGAGAAGCTGACCAAGCATGCCAAGACCAACAAGAGCGCCTTGCTGACGACGCTGTACCAGACCTCCGGGTTGGCTAAGAACCAACAGGGCTTCCTCCGAGTAGCAGCCGACGACGGTGAGATTACTTTCGGGTCGGCAAGCAAGGGTGGACAAATGAACTCCAAGCTGGTCAAGTCTGTGACAGCTCAGCCCTTCAACATTTCCGTGCTTCAGGTTAGTTCCATCATAGAGGTTCCCGACATTAATGCTAATCCTTCCCCCGAAAAGGCTCCGGCACCGAAGAGGGGGAAGCCTCCGAGTTCGTCCGACGACGCCGACAGTCCCTCCTACGACGACGCTGACAGTCCCTCCGACGACGACGCTGACAGTCCCTCCGACGACACAGCCGACAGTCCCGGGGACGACTCGGACACGGAGGCTCCCAGTCCGTCAAAGCACCATACACCACCCAAGCCTAAGGATGATACGTCAGATTCGCCATCGTCGAGTCCAGCGCCTGCGCCCGGTAAGAGTGATGCACGCGCCACCGCTGCGGAGATGGGCGTTGGGGTTGTTGCTATGGGGTTAGTTTCGGTGTTAGTTGCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

292

Amino Acids

30.67

Weight (kDa)

4.63

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 559
AccII CGCG 1 cut(s) 807
AciI CCGC 4 cut(s) 169, 213, 813, 818
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 4 cut(s) 193, 550, 569, 788
AgsI TTSAA 3 cut(s) 79, 124, 481
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
AluI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 680
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 130, 389, 815
AseI ATTAAT 1 cut(s) 528
AspA2I CCTAGG 1 cut(s) 217
AspLEI GCGC 5 cut(s) 206, 323, 781, 787, 809
AsuC2I CCSGG 4 cut(s) 352, 681, 682, 789
AsuHPI GGTGA 4 cut(s) 76, 172, 233, 413
AvaI CYCGRG 1 cut(s) 680
AvrII CCTAGG 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 741
BanI GGYRCC 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 142, 401, 802
BccI CCATC 4 cut(s) 185, 515, 772, 817
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BcnI CCSGG 4 cut(s) 352, 681, 682, 789
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 2 cut(s) 324, 782
BisI GCNGC 4 cut(s) 131, 214, 390, 816
BlnI CCTAGG 1 cut(s) 217
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 4 cut(s) 132, 215, 391, 817
Bme1390I CCNGG 4 cut(s) 352, 681, 682, 789
BmeT110I CYCGRG 1 cut(s) 680
BmgBI CACGTC 1 cut(s) 262
BmiI GGNNCC 4 cut(s) 519, 555, 561, 705
BmrFI CCNGG 4 cut(s) 352, 681, 682, 789
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 4 cut(s) 352, 681, 682, 789
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 192, 217, 680, 681
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 550, 569, 788
Bse1I ACTGG 1 cut(s) 708
Bse21I CCTNAGG 1 cut(s) 741
BseDI CCNNGG 4 cut(s) 192, 217, 680, 681
BseGI GGATG 2 cut(s) 264, 751
BseLI CCNNNNNNNGG 4 cut(s) 193, 550, 569, 788
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 142, 401, 802
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 4 cut(s) 351, 557, 681, 789
BslFI GGGAC 5 cut(s) 591, 615, 639, 663, 698
BslI CCNNNNNNNGG 4 cut(s) 193, 550, 569, 788
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 5 cut(s) 591, 615, 639, 663, 698
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 159, 246
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 4 cut(s) 169, 213, 813, 818
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 807
BspHI TCATGA 2 cut(s) 45, 249
BspLI GGNNCC 4 cut(s) 519, 555, 561, 705
BspT107I GGYRCC 1 cut(s) 559
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 4 cut(s) 192, 217, 680, 681
BssMI GATC 2 cut(s) 159, 246
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 6 cut(s) 184, 401, 605, 629, 653, 677
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 4 cut(s) 303, 424, 783, 805
BstDEI CTNAG 3 cut(s) 360, 471, 741
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 264, 751
BstFNI CGCG 1 cut(s) 807
BstH2I RGCGCY 2 cut(s) 324, 782
BstHHI GCGC 5 cut(s) 206, 323, 781, 787, 809
BstKTI GATC 2 cut(s) 162, 249
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 159, 246
BstMWI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 815
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 350, 679, 680, 787
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 3 cut(s) 142, 401, 802
BstV2I GAAGAC 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 741
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 264, 751
Cac8I GCNNGC 4 cut(s) 303, 424, 783, 805
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 2 cut(s) 45, 249
CfoI GCGC 5 cut(s) 206, 323, 781, 787, 809
Cfr9I CCCGGG 1 cut(s) 680
CseI GACGC 5 cut(s) 244, 343, 605, 629, 653
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 46, 250, 302
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 360, 471, 741
DpnI GATC 2 cut(s) 161, 248
DpnII GATC 2 cut(s) 159, 246
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 680
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 49, 253, 305
FaiI YATR 6 cut(s) 47, 251, 303, 512, 726, 845
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 5 cut(s) 591, 615, 639, 663, 698
FatI CATG 3 cut(s) 45, 249, 301
Fnu4HI GCNGC 4 cut(s) 131, 214, 390, 816
FokI GGATG 2 cut(s) 251, 758
Fsp4HI GCNGC 4 cut(s) 131, 214, 390, 816
FspBI CTAG 1 cut(s) 218
GlaI GCGC 5 cut(s) 205, 322, 780, 786, 808
GluI GCNGC 4 cut(s) 131, 214, 390, 816
HaeII RGCGCY 2 cut(s) 324, 782
HaeIII GGCC 1 cut(s) 216
HapII CCGG 4 cut(s) 351, 557, 681, 789
HgaI GACGC 5 cut(s) 244, 343, 605, 629, 653
HhaI GCGC 5 cut(s) 206, 323, 781, 787, 809
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 3 cut(s) 49, 253, 305
Hin6I GCGC 5 cut(s) 204, 321, 779, 785, 807
HinP1I GCGC 5 cut(s) 204, 321, 779, 785, 807
HinfI GANTC 3 cut(s) 689, 758, 772
HpaII CCGG 4 cut(s) 351, 557, 681, 789
HphI GGTGA 4 cut(s) 76, 172, 233, 413
Hpy166II GTNNAC 3 cut(s) 196, 259, 434
Hpy188I TCNGA 7 cut(s) 383, 582, 592, 637, 661, 694, 757
Hpy188III TCNNGA 3 cut(s) 46, 250, 521
Hpy8I GTNNAC 3 cut(s) 196, 259, 434
HpyAV CCTTC 5 cut(s) 43, 50, 235, 487, 549
HpyCH4III ACNGT 6 cut(s) 184, 401, 605, 629, 653, 677
HpyCH4IV ACGT 2 cut(s) 261, 752
HpyCH4V TGCA 1 cut(s) 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 815
HpyF3I CTNAG 3 cut(s) 360, 471, 741
HpySE526I ACGT 2 cut(s) 261, 752
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 3 cut(s) 49, 253, 305
HspAI GCGC 5 cut(s) 204, 321, 779, 785, 807
Kzo9I GATC 2 cut(s) 159, 246
LmnI GCTCC 5 cut(s) 96, 171, 236, 559, 709
Lsp1109I GCAGC 3 cut(s) 142, 401, 802
LweI GCATC 1 cut(s) 790
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 261, 752
MaeIII GTNAC 3 cut(s) 221, 235, 463
MalI GATC 2 cut(s) 161, 248
MboI GATC 2 cut(s) 159, 246
MboII GAAGA 3 cut(s) 28, 116, 577
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 2 cut(s) 683, 781
MmeI TCCRAC 3 cut(s) 615, 660, 684
MseI TTAA 2 cut(s) 56, 528
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 4 cut(s) 351, 557, 681, 789
MspR9I CCNGG 4 cut(s) 352, 681, 682, 789
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 815
NciI CCSGG 4 cut(s) 352, 681, 682, 789
NdeII GATC 2 cut(s) 159, 246
NlaIII CATG 3 cut(s) 49, 253, 305
NlaIV GGNNCC 4 cut(s) 519, 555, 561, 705
NmuCI GTSAC 2 cut(s) 221, 463
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PagI TCATGA 2 cut(s) 45, 249
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 267, 276, 669, 767
PfeI GAWTC 1 cut(s) 758
PkrI GCNGC 4 cut(s) 132, 215, 391, 817
PleI GAGTC 2 cut(s) 683, 780
PpsI GAGTC 2 cut(s) 683, 780
PshBI ATTAAT 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 519, 555, 561, 705
PstNI CAGNNNCTG 1 cut(s) 782
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 56, 528
SatI GCNGC 4 cut(s) 131, 214, 390, 816
Sau3AI GATC 2 cut(s) 159, 246
SchI GAGTC 2 cut(s) 683, 781
ScrFI CCNGG 4 cut(s) 352, 681, 682, 789
SduI GDGCHC 1 cut(s) 176
SfaNI GCATC 1 cut(s) 790
SmaI CCCGGG 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 488
SphI GCATGC 1 cut(s) 305
SsiI CCGC 4 cut(s) 169, 213, 813, 818
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 4 cut(s) 350, 679, 680, 787
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 6 cut(s) 184, 401, 605, 629, 653, 677
TaiI ACGT 2 cut(s) 264, 755
TaqI TCGA 3 cut(s) 96, 270, 770
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 758
Tru1I TTAA 2 cut(s) 56, 528
Tru9I TTAA 2 cut(s) 56, 528
TseFI GTSAC 2 cut(s) 221, 463
TseI GCWGC 3 cut(s) 130, 389, 815
Tsp45I GTSAC 2 cut(s) 221, 463
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 4 cut(s) 223, 478, 702, 713
TspMI CCCGGG 1 cut(s) 680
VspI ATTAAT 1 cut(s) 528
XceI RCATGY 1 cut(s) 305
XmaI CCCGGG 1 cut(s) 680
XmaJI CCTAGG 1 cut(s) 217
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.