Rroxscaffold_2G00112680

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001500
Physical Location & Seq
Forward (+)
37970936 .. 37971724
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112680.1

Sequence Viewer

Length: 789 bp
ATGTTCAATAGTCCTCAGTTTGCCAAGATGTATTTTCCAATTTCTACTCTCTTGCTCTCCTTCCTTTTCTCTTGTTCATATGCTTTCAACATCACCAACATATTAAACGACCACAAAGATTTCAGCACCTTCAATGACTACTTAACTCGAACCACAGTTGCCGACCAGATCAACAAACGCGAAAGCCTCACAATCTTCGTAGTCGACAATGGTGGGATGGGCTCGGTCACTGGAAAATCATTGGACATGGTTGCAAAGATTTTGAGCCTCCACGTTGCCCTAGAGTACTTTGATACCTCAAAGCTCCAACAGTTGCCGACAGACCAGCCAACCCTTATGACCACACTGCTTCAAGCCAACGGCCAAGCAACTGGCCAACAGGGTTTCTTGAAAGCCACAATCGGTGGTAACAGCAGCGAAGGAGGAGTCACGATTTCTTCAGCTTCTAGTTCTGATCAGAGCGCACATGTAGTCAGTAGTGTTACGAGTCAGCCGTATAACATTTCCGTGATCCAAATTAGCAATGCAATAATGCCTAATATCATCTCTCCACCAACTTCAGCTCCTACTAGTTTGCCTTCGAAAAGCCCAGCCAACTCTCCGAAATCAGCTTCGCCAAAGGGCTTGTTGGACTCTCCAAATGCGGCTCCAGGTACCGGTACTGCAGATGGTTCCACTGCAGCCTCTCCAGATGCTAAGTCATCTGGGACATCAGTGTTTTCCGCTACCTATGCTTTTGTCATCTCTGTAGTTTTGTTGTCCACTTTGTCTTTGATGAGACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

262

Amino Acids

27.45

Weight (kDa)

6.26

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 653
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 644, 723
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 2 cut(s) 361, 373
AcuI CTGAAG 2 cut(s) 423, 543
AfaI GTAC 3 cut(s) 287, 655, 661
AfiI CCNNNNNNNGG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 466
AgeI ACCGGT 1 cut(s) 656
AgsI TTSAA 5 cut(s) 7, 88, 133, 353, 391
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 4 cut(s) 304, 443, 563, 611
AluI AGCT 4 cut(s) 304, 443, 563, 611
Alw26I GTCTC 1 cut(s) 772
AlwI GGATC 1 cut(s) 505
AoxI GGCC 2 cut(s) 361, 373
ApeKI GCWGC 2 cut(s) 414, 680
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
AsiGI ACCGGT 1 cut(s) 656
Asp718I GGTACC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 581
BalI TGGCCA 1 cut(s) 375
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 426, 692
BccI CCATC 2 cut(s) 211, 662
BceAI ACGGC 2 cut(s) 376, 478
BciT130I CCWGG 1 cut(s) 651
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 772
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 3 cut(s) 281, 447, 570
BfmI CTRYAG 3 cut(s) 663, 678, 747
BisI GCNGC 3 cut(s) 415, 645, 681
BlsI GCNGC 3 cut(s) 416, 646, 682
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 651
BmiI GGNNCC 3 cut(s) 648, 655, 673
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 682
BpmI CTGGAG 2 cut(s) 633, 672
Bpu14I TTCGAA 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 656
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 2 cut(s) 235, 376
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 1 cut(s) 651
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 235, 376
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 2 cut(s) 426, 692
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 363, 375
BshNI GGYRCC 1 cut(s) 653
BshTI ACCGGT 1 cut(s) 656
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 2 cut(s) 363, 375
Bsp119I TTCGAA 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 3 cut(s) 168, 454, 510
BspACI CCGC 2 cut(s) 644, 723
BspANI GGCC 2 cut(s) 363, 375
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 3 cut(s) 648, 655, 673
BspMAI CTGCAG 2 cut(s) 667, 682
BspPI GGATC 1 cut(s) 505
BspT104I TTCGAA 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 2 cut(s) 235, 376
BssAI RCCGGY 1 cut(s) 656
BssMI GATC 3 cut(s) 168, 454, 510
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 2 cut(s) 157, 312
BstBI TTCGAA 1 cut(s) 581
BstDEI CTNAG 2 cut(s) 15, 696
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 3 cut(s) 171, 457, 513
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 3 cut(s) 168, 454, 510
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 649
BstSFI CTRYAG 3 cut(s) 663, 678, 747
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 426, 692
BstXI CCANNNNNNTGG 1 cut(s) 371
BsuRI GGCC 2 cut(s) 363, 375
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 2 cut(s) 344, 675
BtsIMutI CAGTG 4 cut(s) 228, 344, 675, 720
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 656
Csp6I GTAC 3 cut(s) 286, 654, 660
CspAI ACCGGT 1 cut(s) 656
CviAII CATG 3 cut(s) 247, 467, 786
CviQI GTAC 3 cut(s) 286, 654, 660
DdeI CTNAG 2 cut(s) 15, 696
DpnI GATC 3 cut(s) 170, 456, 512
DpnII GATC 3 cut(s) 168, 454, 510
EaeI YGGCCR 2 cut(s) 361, 373
Eco24I GRGCYC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 423, 543
EcoRII CCWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 3 cut(s) 250, 470, 789
FaiI YATR 9 cut(s) 79, 81, 101, 248, 338, 468, 498, 732, 787
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 246, 466, 785
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 415, 645, 681
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 415, 645, 681
FspBI CTAG 3 cut(s) 281, 447, 570
GlaI GCGC 1 cut(s) 463
GluI GCNGC 3 cut(s) 415, 645, 681
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 2 cut(s) 633, 672
HaeIII GGCC 2 cut(s) 363, 375
HapII CCGG 1 cut(s) 657
HhaI GCGC 1 cut(s) 464
Hin1II CATG 3 cut(s) 250, 470, 789
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 3 cut(s) 426, 487, 632
HpaII CCGG 1 cut(s) 657
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 205, 762
Hpy188I TCNGA 3 cut(s) 454, 459, 603
Hpy188III TCNNGA 3 cut(s) 388, 430, 689
Hpy8I GTNNAC 2 cut(s) 205, 762
HpyAV CCTTC 4 cut(s) 70, 139, 413, 588
HpyCH4III ACNGT 2 cut(s) 157, 312
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 254, 527, 665, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpyF3I CTNAG 2 cut(s) 15, 696
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 3 cut(s) 250, 470, 789
HspAI GCGC 1 cut(s) 462
KpnI GGTACC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 168, 454, 510
LmnI GCTCC 3 cut(s) 309, 568, 652
Lsp1109I GCAGC 2 cut(s) 426, 692
LweI GCATC 1 cut(s) 682
MaeI CTAG 3 cut(s) 281, 447, 570
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 4 cut(s) 226, 407, 427, 481
MalI GATC 3 cut(s) 170, 456, 512
MboI GATC 3 cut(s) 168, 454, 510
MboII GAAGA 2 cut(s) 187, 429
MhlI GDGCHC 1 cut(s) 224
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 2 cut(s) 39, 516
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 3 cut(s) 435, 496, 626
MmeI TCCRAC 2 cut(s) 331, 609
MnlI CCTC 6 cut(s) 24, 197, 278, 307, 416, 694
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 104, 143
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 375
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 651
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 731
NdeI CATATG 1 cut(s) 79
NdeII GATC 3 cut(s) 168, 454, 510
NlaIII CATG 3 cut(s) 250, 470, 789
NlaIV GGNNCC 3 cut(s) 648, 655, 673
NmuCI GTSAC 2 cut(s) 226, 427
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 581
PciI ACATGT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 656
PkrI GCNGC 3 cut(s) 416, 646, 682
PleI GAGTC 3 cut(s) 434, 495, 626
PpsI GAGTC 3 cut(s) 434, 495, 626
PscI ACATGT 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 648, 655, 673
PstI CTGCAG 2 cut(s) 667, 682
RsaI GTAC 3 cut(s) 287, 655, 661
RsaNI GTAC 3 cut(s) 286, 654, 660
RseI CAYNNNNRTG 1 cut(s) 506
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 104, 143
SatI GCNGC 3 cut(s) 415, 645, 681
Sau3AI GATC 3 cut(s) 168, 454, 510
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 3 cut(s) 435, 496, 626
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 1 cut(s) 224
SetI ASST 9 cut(s) 131, 276, 299, 306, 445, 565, 613, 655, 731
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 3 cut(s) 663, 678, 747
SfuI TTCGAA 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 506
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 2 cut(s) 39, 516
SsiI CCGC 2 cut(s) 644, 723
SspMI CTAG 3 cut(s) 281, 447, 570
StyD4I CCNGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 157, 312
TaiI ACGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 148, 204, 581
TaqII GACCGA 1 cut(s) 214
TasI AATT 2 cut(s) 39, 516
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 647
Tru1I TTAA 2 cut(s) 104, 143
Tru9I TTAA 2 cut(s) 104, 143
TscAI CASTG 4 cut(s) 235, 351, 682, 720
TseFI GTSAC 2 cut(s) 226, 427
TseI GCWGC 2 cut(s) 414, 680
Tsp45I GTSAC 2 cut(s) 226, 427
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 4 cut(s) 235, 351, 682, 720
XceI RCATGY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 3 cut(s) 281, 447, 570
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.