Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036403.1

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 510

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggagacgaataaagctaaagcctctgtctccttcttccttctcatgatgttgttaataagctcttgttcggctttcaacatcaccaagctcctcgaaaaggaagacgatttcagcaacttcaaccagcagctctcccagaccaaaatcgccgaccagatcaacaagcgaagcaccatcaccgtcctcgccgtggacaacagcgcaataggcggtctaggtgacgacagctccgtgacgaaggcgatcatgagcgtccacgtcatcctcgactactacgacaaggagaagctgaccaagcatgccaagaccaacaagagcgccacgctgacgacgctgtaccagacctccgggttggctaagaaccaacagggcttcctccgagtagcagccgacgacggtgagattactttcgggtcggcaagcaagggtggacaaatgaactccaagctggtcaagtctgtgacagctcagcccttcaacatttccgtgcttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

166

Amino Acids

18.02

Weight (kDa)

8.95

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	100, 193
AgsI	TTSAA	3 cut(s)	79, 124, 481
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	8 cut(s)	17, 63, 91, 133, 231, 292, 451, 470
AluI	AGCT	8 cut(s)	17, 63, 91, 133, 231, 292, 451, 470
Alw26I	GTCTC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	130, 389
AspLEI	GCGC	2 cut(s)	206, 323
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	4 cut(s)	76, 172, 233, 413
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	142, 401
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	2 cut(s)	131, 390
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	2 cut(s)	132, 391
Bme1390I	CCNGG	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 193
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	100, 193
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	142, 401
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	100, 193
BsmAI	GTCTC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	159, 246
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	2 cut(s)	45, 249
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	159, 246
Bst4CI	ACNGT	2 cut(s)	184, 401
BstC8I	GCNNGC	2 cut(s)	303, 424
BstDEI	CTNAG	2 cut(s)	360, 471
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	206, 323
BstKTI	GATC	2 cut(s)	162, 249
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	159, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 298, 334
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	142, 401
BstV2I	GAAGAC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	303, 424
CciI	TCATGA	2 cut(s)	45, 249
CfoI	GCGC	2 cut(s)	206, 323
CseI	GACGC	2 cut(s)	244, 343
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	46, 250, 302
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	360, 471
DpnI	GATC	2 cut(s)	161, 248
DpnII	GATC	2 cut(s)	159, 246
Eco57I	CTGAAG	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	49, 253, 305
FaiI	YATR	3 cut(s)	47, 251, 303
FatI	CATG	3 cut(s)	45, 249, 301
Fnu4HI	GCNGC	2 cut(s)	131, 390
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	131, 390
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	2 cut(s)	205, 322
GluI	GCNGC	2 cut(s)	131, 390
HaeII	RGCGCY	1 cut(s)	324
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	2 cut(s)	244, 343
HhaI	GCGC	2 cut(s)	206, 323
Hin1II	CATG	3 cut(s)	49, 253, 305
Hin6I	GCGC	2 cut(s)	204, 321
HinP1I	GCGC	2 cut(s)	204, 321
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	4 cut(s)	76, 172, 233, 413
Hpy166II	GTNNAC	3 cut(s)	196, 259, 434
Hpy188I	TCNGA	1 cut(s)	383
Hpy188III	TCNNGA	2 cut(s)	46, 250
Hpy8I	GTNNAC	3 cut(s)	196, 259, 434
Hpy99I	CGWCG	3 cut(s)	337, 398, 401
HpyAV	CCTTC	4 cut(s)	43, 50, 235, 487
HpyCH4III	ACNGT	2 cut(s)	184, 401
HpyCH4IV	ACGT	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 298, 334
HpyF3I	CTNAG	2 cut(s)	360, 471
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	49, 253, 305
HspAI	GCGC	2 cut(s)	204, 321
Kzo9I	GATC	2 cut(s)	159, 246
LmnI	GCTCC	2 cut(s)	96, 236
LpnPI	CCDG	7 cut(s)	140, 152, 170, 356, 356, 364, 437
Lsp1109I	GCAGC	2 cut(s)	142, 401
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	221, 235, 463
MalI	GATC	2 cut(s)	161, 248
MboI	GATC	2 cut(s)	159, 246
MboII	GAAGA	2 cut(s)	28, 116
MnlI	CCTC	6 cut(s)	34, 104, 197, 278, 358, 389
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	210, 298, 334
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	2 cut(s)	159, 246
NlaIII	CATG	3 cut(s)	49, 253, 305
NmuCI	GTSAC	3 cut(s)	221, 235, 463
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	2 cut(s)	45, 249
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 267, 276
PkrI	GCNGC	2 cut(s)	132, 391
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	131, 390
Sau3AI	GATC	2 cut(s)	159, 246
ScrFI	CCNGG	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	305
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	184, 401
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	96, 270
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseFI	GTSAC	3 cut(s)	221, 235, 463
TseI	GCWGC	2 cut(s)	130, 389
Tsp45I	GTSAC	3 cut(s)	221, 235, 463
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	2 cut(s)	223, 478
XagI	CCTNNNNNAGG	1 cut(s)	98
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.