Rw2G028570

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001500
Physical Location & Seq
Reverse (-)
45803232 .. 45804008
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028570.1

Sequence Viewer

Length: 777 bp
ATGTTCAATAGTCCTCAGTTTGCCAAGATGTATTTTCCAATTTCTACTCTCTTGCTCTCCTCCTTCCTTTTCTCTTGTTCATCTGCTTTCAACATCACCAACATATTAAACGACCACAAAGATTTCAGCACCTTCAATGACTACTTAACCCGAACCACAGTTGCCGACCAGATCAACAAACGCGAGAGCCTCACAATCTTCGTAGTCGACAATGGTGGGATGGGTTCGGTCACTGGAAAATCATTGGACATGGTCGCAAAGATTTTGAGCCTCCACGTTGCCCTAGAGTACTTTGACACCTCAAAGCTCCAACACTTGCCGACAGACCAGCCAACCCTTCTGACCACACTGCTTCAAGCCAACGGCCAAGCAACTGGCCAACAGGGTTTCTTGAAAGCCACAATCGGCGGTAACAGCAGCGAAGGAGGAGTCACGATTTCTTCAGCTTCTAGTTCTGATCAGAGCGCACATGTAGTCAGTAGTGTTACGAGTCAGCCGTATAACATTTCCGTGATCCAAATTAGCAATGCAATAATGCCTAATATCATCTCTCCACCAGCTGCAGCTCCTACTCATTTGCCTTCGAAAAGCCCAGCCAACTCTCCGAAATCAGCTTCGCCAAAGGGCTTGTTGGACTCTCCAAATGCGGCTCCAGGTACCGGTACTGCAGCCTCTCCAGATGCTAAGTCATCTGGGACATCAGTGTTTTCCGTTACCTATGCTTTTGTCATCTCTGTAGTTTTGTTGTCCACTTTGTCTTTGATGAGACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

258

Amino Acids

27.05

Weight (kDa)

6.96

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 656
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 408, 647
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 2 cut(s) 364, 376
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 3 cut(s) 290, 658, 664
AfiI CCNNNNNNNGG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 469
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 5 cut(s) 7, 91, 136, 356, 394
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 5 cut(s) 307, 446, 560, 566, 614
AluI AGCT 5 cut(s) 307, 446, 560, 566, 614
Alw26I GTCTC 1 cut(s) 760
AlwI GGATC 1 cut(s) 508
AoxI GGCC 2 cut(s) 364, 376
ApeKI GCWGC 4 cut(s) 417, 560, 563, 668
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AsiGI ACCGGT 1 cut(s) 659
Asp718I GGTACC 1 cut(s) 656
AspLEI GCGC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 584
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 656
BbvI GCAGC 4 cut(s) 429, 547, 575, 680
BccI CCATC 1 cut(s) 214
BceAI ACGGC 2 cut(s) 379, 481
BciT130I CCWGG 1 cut(s) 654
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 760
BfaI CTAG 2 cut(s) 284, 450
BfmI CTRYAG 3 cut(s) 561, 666, 735
BisI GCNGC 5 cut(s) 418, 561, 564, 648, 669
BlsI GCNGC 5 cut(s) 419, 562, 565, 649, 670
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 654
BmiI GGNNCC 2 cut(s) 651, 658
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 670
BpmI CTGGAG 2 cut(s) 636, 660
Bpu14I TTCGAA 1 cut(s) 584
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 1 cut(s) 659
Bse118I RCCGGY 1 cut(s) 659
Bse1I ACTGG 2 cut(s) 238, 379
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 1 cut(s) 654
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 659
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 238, 379
BseRI GAGGAG 2 cut(s) 49, 441
BseXI GCAGC 4 cut(s) 429, 547, 575, 680
BseYI CCCAGC 1 cut(s) 592
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 366, 378
BshNI GGYRCC 1 cut(s) 656
BshTI ACCGGT 1 cut(s) 659
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 1 cut(s) 659
BsmAI GTCTC 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 709
BsnI GGCC 2 cut(s) 366, 378
Bsp119I TTCGAA 1 cut(s) 584
Bsp143I GATC 3 cut(s) 171, 457, 513
BspACI CCGC 2 cut(s) 408, 647
BspANI GGCC 2 cut(s) 366, 378
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 651, 658
BspMAI CTGCAG 2 cut(s) 565, 670
BspPI GGATC 1 cut(s) 508
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 532
BsrFI RCCGGY 1 cut(s) 659
BsrI ACTGG 2 cut(s) 238, 379
BssAI RCCGGY 1 cut(s) 659
BssMI GATC 3 cut(s) 171, 457, 513
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 584
BstDEI CTNAG 2 cut(s) 15, 684
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 3 cut(s) 174, 460, 516
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 3 cut(s) 171, 457, 513
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 3 cut(s) 561, 666, 735
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 4 cut(s) 429, 547, 575, 680
BstXI CCANNNNNNTGG 1 cut(s) 374
BsuRI GGCC 2 cut(s) 366, 378
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 3 cut(s) 231, 347, 708
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 659
Csp6I GTAC 3 cut(s) 289, 657, 663
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 3 cut(s) 250, 470, 774
CviQI GTAC 3 cut(s) 289, 657, 663
DdeI CTNAG 2 cut(s) 15, 684
DpnI GATC 3 cut(s) 173, 459, 515
DpnII GATC 3 cut(s) 171, 457, 513
EaeI YGGCCR 2 cut(s) 364, 376
Eco57I CTGAAG 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 652
FaeI CATG 3 cut(s) 253, 473, 777
FaiI YATR 6 cut(s) 104, 251, 471, 501, 720, 775
FaqI GGGAC 1 cut(s) 709
FatI CATG 3 cut(s) 249, 469, 773
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 418, 561, 564, 648, 669
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 5 cut(s) 418, 561, 564, 648, 669
FspBI CTAG 2 cut(s) 284, 450
GlaI GCGC 1 cut(s) 466
GluI GCNGC 5 cut(s) 418, 561, 564, 648, 669
GsaI CCCAGC 1 cut(s) 596
GsuI CTGGAG 2 cut(s) 636, 660
HaeIII GGCC 2 cut(s) 366, 378
HapII CCGG 1 cut(s) 660
HhaI GCGC 1 cut(s) 467
Hin1II CATG 3 cut(s) 253, 473, 777
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 3 cut(s) 429, 490, 635
HpaII CCGG 1 cut(s) 660
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 208, 750
Hpy188I TCNGA 4 cut(s) 342, 457, 462, 606
Hpy188III TCNNGA 3 cut(s) 391, 433, 677
Hpy8I GTNNAC 2 cut(s) 208, 750
HpyAV CCTTC 5 cut(s) 73, 142, 347, 416, 591
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 530, 563, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 15, 684
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 253, 473, 777
HspAI GCGC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 171, 457, 513
LmnI GCTCC 3 cut(s) 312, 571, 655
Lsp1109I GCAGC 4 cut(s) 429, 547, 575, 680
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 284, 450
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 5 cut(s) 229, 410, 430, 484, 712
MalI GATC 3 cut(s) 173, 459, 515
MboI GATC 3 cut(s) 171, 457, 513
MboII GAAGA 2 cut(s) 190, 432
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 2 cut(s) 39, 519
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 3 cut(s) 438, 499, 629
MmeI TCCRAC 2 cut(s) 334, 612
MnlI CCTC 7 cut(s) 24, 70, 200, 281, 310, 419, 682
Mox20I TGGCCA 1 cut(s) 378
MscI TGGCCA 1 cut(s) 378
MseI TTAA 2 cut(s) 107, 146
MslI CAYNNNNRTG 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 414
NdeII GATC 3 cut(s) 171, 457, 513
NlaIII CATG 3 cut(s) 253, 473, 777
NlaIV GGNNCC 2 cut(s) 651, 658
NmuCI GTSAC 2 cut(s) 229, 430
NspI RCATGY 1 cut(s) 473
NspV TTCGAA 1 cut(s) 584
PciI ACATGT 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PflFI GACNNNGTC 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 659
PkrI GCNGC 5 cut(s) 419, 562, 565, 649, 670
PleI GAGTC 3 cut(s) 437, 498, 629
PpsI GAGTC 3 cut(s) 437, 498, 629
PscI ACATGT 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 651, 658
PstI CTGCAG 2 cut(s) 565, 670
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 3 cut(s) 290, 658, 664
RsaNI GTAC 3 cut(s) 289, 657, 663
RseI CAYNNNNRTG 1 cut(s) 509
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 107, 146
SatI GCNGC 5 cut(s) 418, 561, 564, 648, 669
Sau3AI GATC 3 cut(s) 171, 457, 513
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 3 cut(s) 438, 499, 629
ScrFI CCNGG 1 cut(s) 654
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 3 cut(s) 561, 666, 735
SfuI TTCGAA 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 509
Sse9I AATT 2 cut(s) 39, 519
SsiI CCGC 2 cut(s) 408, 647
SspMI CTAG 2 cut(s) 284, 450
StyD4I CCNGG 1 cut(s) 652
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 207, 584
TaqII GACCGA 1 cut(s) 217
TasI AATT 2 cut(s) 39, 519
TatI WGTACW 1 cut(s) 288
TauI GCSGC 1 cut(s) 650
Tru1I TTAA 2 cut(s) 107, 146
Tru9I TTAA 2 cut(s) 107, 146
TscAI CASTG 3 cut(s) 238, 354, 708
TseFI GTSAC 2 cut(s) 229, 430
TseI GCWGC 4 cut(s) 417, 560, 563, 668
Tsp45I GTSAC 2 cut(s) 229, 430
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 2 cut(s) 499, 700
TspRI CASTG 3 cut(s) 238, 354, 708
Tth111I GACNNNGTC 1 cut(s) 251
XceI RCATGY 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 2 cut(s) 284, 450
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.