FvH4_6g28020

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001500
Physical Location & Seq
Reverse (-)
21554314 .. 21555144
831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28020.t1

Sequence Viewer

Length: 618 bp
ATGCTAAGCAACTACAAAGATTTCAGCACCTTCAATGACTACTTAACCCGAACCACAGTTGCCGATCAGATCAACAAACGCGAAAGCCTCACCATCTTCGTTGTTGACAATGGTGCGATGGGATCGGTCACTAAAAAATCACTGGACATGGCCAGCAAAATCTTGAGCCTTCACGTTGCCCTTGAGTACTTTGACACCAAGAAGCTCCAACAATTGCCAACAAACGAGCCAACCCTTATGACCACACTACTTCAAGCCAACGGCCAACCAACTGGCCAGCAGGGTTTCTTGAAGGCCACAATTGGTGGTAACAGCAGCGGAGGAGGAGGAGTCAGTATTTCCTTGGCCTCTAGCTCTGATCAGAGCGCAAGTGTAGTCCAGAGTGTTACTAGTCAGCCTTATAACATTTCCGTGATCCAAATCAGCAATGCGATAGTGCCTAATATCATCTCTCCACCAACTGCAGCTCCTACTAAAATGCCTTCATCTCCTTCGGAAAGCCCAGCCGACTCTCCGGGATCGCCAAAGGGCTTGTTGGACTCTCCAAATGCTGCTCCAGGTACCGGTACTGCAGATGGTTCGACTGCAGCCTCTCCAGATGTCGATCTGTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

206

Amino Acids

21.2

Weight (kDa)

5.0

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 7 - 82 5e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 560
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 318
AclWI GGATC 3 cut(s) 130, 409, 526
AcoI YGGCCR 3 cut(s) 150, 262, 274
AfaI GTAC 3 cut(s) 188, 562, 568
AfiI CCNNNNNNNGG 1 cut(s) 563
AgeI ACCGGT 1 cut(s) 563
AgsI TTSAA 4 cut(s) 34, 254, 292, 613
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 3 cut(s) 205, 354, 467
AluI AGCT 3 cut(s) 205, 354, 467
AlwI GGATC 3 cut(s) 130, 409, 526
AoxI GGCC 5 cut(s) 150, 262, 274, 294, 345
ApeKI GCWGC 4 cut(s) 315, 464, 551, 587
AsiGI ACCGGT 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 82
BalI TGGCCA 2 cut(s) 152, 276
BanI GGYRCC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 327, 476, 538, 599
BccI CCATC 3 cut(s) 101, 112, 569
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 1 cut(s) 558
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 516
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 2 cut(s) 351, 390
BfmI CTRYAG 3 cut(s) 462, 570, 585
BisI GCNGC 4 cut(s) 316, 465, 552, 588
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 4 cut(s) 317, 466, 553, 589
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 516, 558
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 516, 558
BpmI CTGGAG 2 cut(s) 540, 579
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 184, 203
BpuMI CCSGG 1 cut(s) 516
BsaBI GATNNNNATC 2 cut(s) 419, 603
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 563
BsaXI ACNNNNNCTCC 4 cut(s) 315, 345, 451, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 147, 277
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 2 cut(s) 419, 603
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 342
BseJI GATNNNNATC 2 cut(s) 419, 603
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMI GCAATG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 147, 277
BseRI GAGGAG 3 cut(s) 336, 339, 342
BseXI GCAGC 4 cut(s) 327, 476, 538, 599
BseYI CCCAGC 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 5 cut(s) 152, 264, 276, 296, 347
BshNI GGYRCC 1 cut(s) 560
BshTI ACCGGT 1 cut(s) 563
BsiSI CCGG 2 cut(s) 515, 564
BslI CCNNNNNNNGG 1 cut(s) 563
BsnI GGCC 5 cut(s) 152, 264, 276, 296, 347
Bsp143I GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 318
BspANI GGCC 5 cut(s) 152, 264, 276, 296, 347
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 562
BspMAI CTGCAG 3 cut(s) 466, 574, 589
BspPI GGATC 3 cut(s) 130, 409, 526
BspT107I GGYRCC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 2 cut(s) 147, 277
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 154, 278
BstDEI CTNAG 1 cut(s) 5
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 7 cut(s) 67, 72, 125, 361, 417, 521, 607
BstMBI GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 514, 556
BstSFI CTRYAG 3 cut(s) 462, 570, 585
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 327, 476, 538, 599
BstXI CCANNNNNNTGG 1 cut(s) 272
BsuRI GGCC 5 cut(s) 152, 264, 276, 296, 347
BtgZI GCGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 154, 278
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 563
Csp6I GTAC 3 cut(s) 187, 561, 567
CspAI ACCGGT 1 cut(s) 563
CviAII CATG 1 cut(s) 148
CviQI GTAC 3 cut(s) 187, 561, 567
DdeI CTNAG 1 cut(s) 5
DpnI GATC 7 cut(s) 66, 71, 124, 360, 416, 520, 606
DpnII GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
EaeI YGGCCR 3 cut(s) 150, 262, 274
Eco130I CCWWGG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 1 cut(s) 151
FaiI YATR 3 cut(s) 149, 239, 402
FatI CATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 316, 465, 552, 588
Fsp4HI GCNGC 4 cut(s) 316, 465, 552, 588
FspBI CTAG 2 cut(s) 351, 390
GlaI GCGC 1 cut(s) 367
GluI GCNGC 4 cut(s) 316, 465, 552, 588
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 2 cut(s) 540, 579
HaeIII GGCC 5 cut(s) 152, 264, 276, 296, 347
HapII CCGG 2 cut(s) 515, 564
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 3 cut(s) 330, 509, 539
HpaII CCGG 2 cut(s) 515, 564
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 69, 358, 363, 496
Hpy188III TCNNGA 4 cut(s) 163, 289, 379, 596
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 5 cut(s) 40, 179, 286, 492, 501
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 464, 572, 587
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 366
KpnI GGTACC 1 cut(s) 564
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
LmnI GCTCC 3 cut(s) 210, 472, 559
Lsp1109I GCAGC 4 cut(s) 327, 476, 538, 599
MaeI CTAG 2 cut(s) 351, 390
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 127, 308, 385
MalI GATC 7 cut(s) 66, 71, 124, 360, 416, 520, 606
MboI GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
MboII GAAGA 1 cut(s) 88
MfeI CAATTG 2 cut(s) 212, 300
MlsI TGGCCA 2 cut(s) 152, 276
MluCI AATT 2 cut(s) 212, 300
MluNI TGGCCA 2 cut(s) 152, 276
MlyI GAGTC 3 cut(s) 339, 503, 533
MmeI TCCRAC 2 cut(s) 232, 516
MnlI CCTC 6 cut(s) 98, 314, 317, 320, 358, 601
Mox20I TGGCCA 2 cut(s) 152, 276
MscI TGGCCA 2 cut(s) 152, 276
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 2 cut(s) 152, 276
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 2 cut(s) 515, 564
MspR9I CCNGG 2 cut(s) 516, 558
MunI CAATTG 2 cut(s) 212, 300
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 81
NciI CCSGG 1 cut(s) 516
NdeII GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 563
PkrI GCNGC 4 cut(s) 317, 466, 553, 589
PleI GAGTC 3 cut(s) 338, 503, 533
PpsI GAGTC 3 cut(s) 338, 503, 533
PsiI TTATAA 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 562
PstI CTGCAG 3 cut(s) 466, 574, 589
RsaI GTAC 3 cut(s) 188, 562, 568
RsaNI GTAC 3 cut(s) 187, 561, 567
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 4 cut(s) 316, 465, 552, 588
Sau3AI GATC 7 cut(s) 64, 69, 122, 358, 414, 518, 604
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 3 cut(s) 339, 503, 533
ScrFI CCNGG 2 cut(s) 516, 558
SetI ASST 6 cut(s) 32, 177, 207, 356, 469, 562
SfcI CTRYAG 3 cut(s) 462, 570, 585
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 163, 182
SmoI CTYRAG 2 cut(s) 163, 182
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 2 cut(s) 212, 300
SsiI CCGC 1 cut(s) 318
SspMI CTAG 2 cut(s) 351, 390
StyD4I CCNGG 2 cut(s) 514, 556
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 581, 603
TaqII GACCGA 1 cut(s) 115
TasI AATT 2 cut(s) 212, 300
TatI WGTACW 1 cut(s) 186
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 4 cut(s) 315, 464, 551, 587
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 147
XspI CTAG 2 cut(s) 351, 390
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.