Rmu_sc0002589.1_g000028

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002589.1
OG0001500
Physical Location & Seq
Reverse (-)
162561 .. 163310
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002589.1_g000028.1.cds

Sequence Viewer

Length: 750 bp
atgtattttccaatttctactctcttgctctcctccttccttttctcttgttcatctgctttcaacatcaccaacatattaaacgaccacaaagatttcagcaccttcaatgactacttaacccgaaccacagttgccgaccagatcaacaaacgcgagagcctcacaatcttcgtagtcgacaatggtgggatgggttcggtcactggaaaatcattggacatggtcgcaaagattttgagcctccacgttgccctagagtactttgacacctcaaagctccaacacttgccgacagaccagccaacccttatgaccacactgcttcaagccagtggccaagcaactggccaacagggtttcttgaaagccacaatcggcggttacagcagcgaaggaggagtcacgatttcttcagcttctagttctgatcagagcgcacatgtagtcagtagtgttacgaatcagccgtataacatttccgtgatccaaattagcaatgcaataatgcctaatatcatctctccaccagctgcagctcctactcatttgccttcgaaaagcccagccaactctccgaaatcagcttcgccaaagggcttgttggactctccaaatgcggctccaggtaccggtactgcagcctctccagatgctaagtcatctgggacatcagtgttttccgttacctatgcttttgtcatctctgtagttttgttgtccactttgtctttgatgagacttccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

249

Amino Acids

26.07

Weight (kDa)

6.49

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 629
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 381, 620
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 2 cut(s) 337, 349
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 3 cut(s) 263, 631, 637
AfiI CCNNNNNNNGG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 442
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 4 cut(s) 64, 109, 329, 367
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 5 cut(s) 280, 419, 533, 539, 587
AluI AGCT 5 cut(s) 280, 419, 533, 539, 587
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 1 cut(s) 481
AoxI GGCC 2 cut(s) 337, 349
ApeKI GCWGC 4 cut(s) 390, 533, 536, 641
ArsI GACNNNNNNTTYG 2 cut(s) 387, 419
AsiGI ACCGGT 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 629
AspLEI GCGC 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 557
BalI TGGCCA 2 cut(s) 339, 351
BanI GGYRCC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 402, 520, 548, 653
BccI CCATC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 2 cut(s) 257, 423
BfmI CTRYAG 3 cut(s) 534, 639, 708
BisI GCNGC 5 cut(s) 391, 534, 537, 621, 642
BlsI GCNGC 5 cut(s) 392, 535, 538, 622, 643
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 627
BmiI GGNNCC 2 cut(s) 624, 631
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 1 cut(s) 643
BpmI CTGGAG 2 cut(s) 609, 633
Bpu14I TTCGAA 1 cut(s) 557
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 3 cut(s) 211, 333, 352
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 505
BseNI ACTGG 3 cut(s) 211, 333, 352
BseRI GAGGAG 2 cut(s) 22, 414
BseXI GCAGC 4 cut(s) 402, 520, 548, 653
BseYI CCCAGC 1 cut(s) 565
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 339, 351
BshNI GGYRCC 1 cut(s) 629
BshTI ACCGGT 1 cut(s) 632
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 733
BsmFI GGGAC 1 cut(s) 682
BsnI GGCC 2 cut(s) 339, 351
Bsp119I TTCGAA 1 cut(s) 557
Bsp143I GATC 3 cut(s) 144, 430, 486
BspACI CCGC 2 cut(s) 381, 620
BspANI GGCC 2 cut(s) 339, 351
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 624, 631
BspMAI CTGCAG 2 cut(s) 538, 643
BspPI GGATC 1 cut(s) 481
BspT104I TTCGAA 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 3 cut(s) 211, 333, 352
BssAI RCCGGY 1 cut(s) 632
BssMI GATC 3 cut(s) 144, 430, 486
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 3 cut(s) 147, 433, 489
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 3 cut(s) 144, 430, 486
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 625
BstSFI CTRYAG 3 cut(s) 534, 639, 708
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 4 cut(s) 402, 520, 548, 653
BstXI CCANNNNNNTGG 1 cut(s) 347
BsuRI GGCC 2 cut(s) 339, 351
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 4 cut(s) 204, 320, 340, 681
CfoI GCGC 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 632
Csp6I GTAC 3 cut(s) 262, 630, 636
CspAI ACCGGT 1 cut(s) 632
CviAII CATG 3 cut(s) 223, 443, 747
CviQI GTAC 3 cut(s) 262, 630, 636
DdeI CTNAG 1 cut(s) 657
DpnI GATC 3 cut(s) 146, 432, 488
DpnII GATC 3 cut(s) 144, 430, 486
EaeI YGGCCR 2 cut(s) 337, 349
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 625
FaeI CATG 3 cut(s) 226, 446, 750
FaiI YATR 7 cut(s) 77, 224, 314, 444, 474, 693, 748
FaqI GGGAC 1 cut(s) 682
FatI CATG 3 cut(s) 222, 442, 746
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 5 cut(s) 391, 534, 537, 621, 642
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 5 cut(s) 391, 534, 537, 621, 642
FspBI CTAG 2 cut(s) 257, 423
GlaI GCGC 1 cut(s) 439
GluI GCNGC 5 cut(s) 391, 534, 537, 621, 642
GsaI CCCAGC 1 cut(s) 569
GsuI CTGGAG 2 cut(s) 609, 633
HaeIII GGCC 2 cut(s) 339, 351
HapII CCGG 1 cut(s) 633
HhaI GCGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 226, 446, 750
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 3 cut(s) 402, 463, 608
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 181, 723
Hpy188I TCNGA 3 cut(s) 430, 435, 579
Hpy188III TCNNGA 3 cut(s) 364, 406, 650
Hpy8I GTNNAC 2 cut(s) 181, 723
HpyAV CCTTC 4 cut(s) 46, 115, 389, 564
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 503, 536, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 3 cut(s) 226, 446, 750
HspAI GCGC 1 cut(s) 438
KpnI GGTACC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 3 cut(s) 144, 430, 486
LmnI GCTCC 3 cut(s) 285, 544, 628
Lsp1109I GCAGC 4 cut(s) 402, 520, 548, 653
LweI GCATC 1 cut(s) 643
MaeI CTAG 2 cut(s) 257, 423
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 5 cut(s) 202, 383, 403, 457, 685
MalI GATC 3 cut(s) 146, 432, 488
MboI GATC 3 cut(s) 144, 430, 486
MboII GAAGA 2 cut(s) 163, 405
MlsI TGGCCA 2 cut(s) 339, 351
MluCI AATT 2 cut(s) 12, 492
MluNI TGGCCA 2 cut(s) 339, 351
MlyI GAGTC 2 cut(s) 411, 602
MmeI TCCRAC 2 cut(s) 307, 585
MnlI CCTC 6 cut(s) 43, 173, 254, 283, 392, 655
Mox20I TGGCCA 2 cut(s) 339, 351
MscI TGGCCA 2 cut(s) 339, 351
MseI TTAA 2 cut(s) 80, 119
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 2 cut(s) 339, 351
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 3 cut(s) 144, 430, 486
NlaIII CATG 3 cut(s) 226, 446, 750
NlaIV GGNNCC 2 cut(s) 624, 631
NmuCI GTSAC 2 cut(s) 202, 403
NspI RCATGY 1 cut(s) 446
NspV TTCGAA 1 cut(s) 557
PciI ACATGT 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PfeI GAWTC 1 cut(s) 463
PflFI GACNNNGTC 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 5 cut(s) 392, 535, 538, 622, 643
PleI GAGTC 2 cut(s) 410, 602
PpsI GAGTC 2 cut(s) 410, 602
PscI ACATGT 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 625
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 624, 631
PstI CTGCAG 2 cut(s) 538, 643
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 263, 631, 637
RsaNI GTAC 3 cut(s) 262, 630, 636
RseI CAYNNNNRTG 1 cut(s) 482
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 80, 119
SatI GCNGC 5 cut(s) 391, 534, 537, 621, 642
Sau3AI GATC 3 cut(s) 144, 430, 486
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 2 cut(s) 411, 602
ScrFI CCNGG 1 cut(s) 627
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 3 cut(s) 534, 639, 708
SfuI TTCGAA 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 2 cut(s) 12, 492
SsiI CCGC 2 cut(s) 381, 620
SspMI CTAG 2 cut(s) 257, 423
StyD4I CCNGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 180, 557
TaqII GACCGA 1 cut(s) 190
TasI AATT 2 cut(s) 12, 492
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 80, 119
Tru9I TTAA 2 cut(s) 80, 119
TscAI CASTG 4 cut(s) 211, 327, 340, 681
TseFI GTSAC 2 cut(s) 202, 403
TseI GCWGC 4 cut(s) 390, 533, 536, 641
Tsp45I GTSAC 2 cut(s) 202, 403
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 2 cut(s) 472, 673
TspRI CASTG 4 cut(s) 211, 327, 340, 681
Tth111I GACNNNGTC 1 cut(s) 224
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 2 cut(s) 257, 423
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.